rs2836800

Homo sapiens
C>T
LOC101928435 : Non Coding Transcript Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0288 (8629/29954,GnomAD)
C==0284 (8270/29118,TOPMED)
C==0330 (1654/5008,1000G)
C==0293 (1128/3854,ALSPAC)
C==0274 (1015/3708,TWINSUK)
chr21:38975759 (GRCh38.p7) (21q22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
87 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 21NC_000021.9:g.38975759C>T
GRCh37.p13 chr 21NC_000021.8:g.40347685C>T

Gene: LOC101928435, uncharacterized LOC101928435(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01700 transcriptNR_109962.1:n.268G>AG>ANon Coding Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.239T=0.761
1000GenomesAmericanSub694C=0.440T=0.560
1000GenomesEast AsianSub1008C=0.387T=0.613
1000GenomesEuropeSub1006C=0.296T=0.704
1000GenomesGlobalStudy-wide5008C=0.330T=0.670
1000GenomesSouth AsianSub978C=0.350T=0.650
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.293T=0.707
The Genome Aggregation DatabaseAfricanSub8722C=0.252T=0.748
The Genome Aggregation DatabaseAmericanSub834C=0.440T=0.560
The Genome Aggregation DatabaseEast AsianSub1612C=0.383T=0.617
The Genome Aggregation DatabaseEuropeSub18484C=0.288T=0.711
The Genome Aggregation DatabaseGlobalStudy-wide29954C=0.288T=0.711
The Genome Aggregation DatabaseOtherSub302C=0.350T=0.650
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.284T=0.716
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.274T=0.726
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs28368000.000365alcohol dependence21314694

eQTL of rs2836800 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2836800 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr214030961240309829E067-37856
chr214032985440329911E067-17774
chr214032995540330259E067-17426
chr214033030340330561E067-17124
chr214033646140336579E067-11106
chr214033659740336737E067-10948
chr214036143840362696E06713753
chr214036849240368542E06820807
chr214036891740368957E06821232
chr214036904740369190E06821362
chr214037575740377631E06828072
chr214037765140377804E06829966
chr214037806740378148E06830382
chr214037821840378289E06830533
chr214037835740379253E06830672
chr214037936440379499E06831679
chr214037953640379694E06831851
chr214037976240379978E06832077
chr214030986540310615E069-37070
chr214035640340358247E0698718
chr214036428840364436E06916603
chr214037575740377631E06928072
chr214037765140377804E06929966
chr214035836140358438E07010676
chr214035851640358560E07010831
chr214035859540358645E07010910
chr214035876540359030E07011080
chr214035913440361287E07011449
chr214036132740361413E07013642
chr214036271540362941E07015030
chr214035876540359030E07111080
chr214035913440361287E07111449
chr214036132740361413E07113642
chr214036143840362696E07113753
chr214036428840364436E07116603
chr214036447140366436E07116786
chr214037215840372242E07124473
chr214037235540372902E07124670
chr214037575740377631E07128072
chr214037765140377804E07129966
chr214037806740378148E07130382
chr214037821840378289E07130533
chr214037835740379253E07130672
chr214038055640380652E07132871
chr214038070240380742E07133017
chr214030961240309829E072-37856
chr214030986540310615E072-37070
chr214032985440329911E072-17774
chr214032995540330259E072-17426
chr214033030340330561E072-17124
chr214033066240331973E072-15712
chr214036132740361413E07213642
chr214036143840362696E07213753
chr214037575740377631E07228072
chr214037835740379253E07230672
chr214029928940299354E073-48331
chr214030961240309829E073-37856
chr214030986540310615E073-37070
chr214031848140318730E073-28955
chr214032985440329911E073-17774
chr214032995540330259E073-17426
chr214033030340330561E073-17124
chr214036132740361413E07313642
chr214036143840362696E07313753
chr214036670240366780E07319017
chr214036679040366932E07319105
chr214036725940368135E07319574
chr214037575740377631E07328072
chr214037765140377804E07329966
chr214035640340358247E0748718
chr214035876540359030E07411080
chr214035913440361287E07411449
chr214036143840362696E07413753
chr214036271540362941E07415030
chr214036318740363340E07415502
chr214037575740377631E07428072
chr214037765140377804E07429966
chr214037806740378148E07430382
chr214037821840378289E07430533
chr214038070240380742E07433017
chr214030986540310615E081-37070
chr214031070040310774E081-36911
chr214031077940310994E081-36691
chr214036143840362696E08113753
chr214036271540362941E08115030
chr214035876540359030E08211080
chr214036143840362696E08213753