rs2837900

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0138 (4142/29938,GnomAD)
C=0117 (3413/29118,TOPMED)
C=0224 (1121/5008,1000G)
C=0155 (598/3854,ALSPAC)
C=0153 (566/3708,TWINSUK)
chr21:41014748 (GRCh38.p7) (21q22.2)
AD
GWASCatalog
1   publication(s)
See rs on genome
37 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 21NC_000021.9:g.41014748T>C
GRCh37.p13 chr 21NC_000021.8:g.42386674T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.990C=0.010
1000GenomesAmericanSub694T=0.790C=0.210
1000GenomesEast AsianSub1008T=0.443C=0.557
1000GenomesEuropeSub1006T=0.843C=0.157
1000GenomesGlobalStudy-wide5008T=0.776C=0.224
1000GenomesSouth AsianSub978T=0.750C=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.845C=0.155
The Genome Aggregation DatabaseAfricanSub8716T=0.961C=0.039
The Genome Aggregation DatabaseAmericanSub836T=0.730C=0.270
The Genome Aggregation DatabaseEast AsianSub1614T=0.435C=0.565
The Genome Aggregation DatabaseEuropeSub18470T=0.858C=0.141
The Genome Aggregation DatabaseGlobalStudy-wide29938T=0.861C=0.138
The Genome Aggregation DatabaseOtherSub302T=0.820C=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.882C=0.117
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.847C=0.153
PMID Title Author Journal
29460428Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.Gelernter JAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs28379006E-06alcohol consumption measurement29460428

eQTL of rs2837900 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2837900 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr214240919442409417E06822520
chr214240979842410262E06823124
chr214241033842410499E06823664
chr214240979842410262E06923124
chr214241033842410499E06923664
chr214239386242394263E0707188
chr214242665142426738E07039977
chr214242796042428010E07041286
chr214242823142428301E07041557
chr214243557142435639E07048897
chr214243573442436173E07049060
chr214241743042418314E07130756
chr214243557142435639E07148897
chr214243573442436173E07149060
chr214243557142435639E07248897
chr214243573442436173E07249060
chr214243557142435639E07448897
chr214243573442436173E07449060
chr214237865842378885E081-7789
chr214238146442381544E081-5130
chr214238207442382268E081-4406
chr214238245742382685E081-3989
chr214238268742384483E081-2191
chr214238473742384787E081-1887
chr214238536242385667E081-1007
chr214239668542397210E08110011
chr214240365042404160E08116976
chr214241743042418314E08130756
chr214241872142418761E08132047
chr214241909142419242E08132417
chr214238046342380519E082-6155
chr214238169942381963E082-4711
chr214238207442382268E082-4406
chr214238245742382685E082-3989
chr214238268742384483E082-2191
chr214239386242394263E0827188
chr214240365042404160E08216976