SNP Detail Info-rs28570064

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0238 (7099/29772,GnomAD)
A==0204 (5948/29118,TOPMED)
A==0254 (1271/5008,1000G)
A==0201 (774/3854,ALSPAC)
A==0202 (750/3708,TWINSUK)

Position: chr4:58868046 (GRCh38.p7) (4q13.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.58868046A>G
GRCh37.p13 chr 4	NC_000004.11:g.59734211A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.172	G=0.828
1000Genomes	American	Sub	694	A=0.260	G=0.740
1000Genomes	East Asian	Sub	1008	A=0.397	G=0.603
1000Genomes	Europe	Sub	1006	A=0.241	G=0.759
1000Genomes	Global	Study-wide	5008	A=0.254	G=0.746
1000Genomes	South Asian	Sub	978	A=0.230	G=0.770
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.201	G=0.799
The Genome Aggregation Database	African	Sub	8682	A=0.183	G=0.817
The Genome Aggregation Database	American	Sub	826	A=0.230	G=0.770
The Genome Aggregation Database	East Asian	Sub	1580	A=0.425	G=0.575
The Genome Aggregation Database	Europe	Sub	18382	A=0.248	G=0.751
The Genome Aggregation Database	Global	Study-wide	29772	A=0.238	G=0.761
The Genome Aggregation Database	Other	Sub	302	A=0.250	G=0.750
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.204	G=0.795
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.202	G=0.798

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs28570064	0.00072	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs28570064