rs2859242

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0460 (13789/29928,GnomAD)
T=0458 (13356/29118,TOPMED)
T=0460 (2306/5008,1000G)
chr1:172655724 (GRCh38.p7) (1q24.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.172655724C>T
GRCh37.p13 chr 1NC_000001.10:g.172624864C>T
FASLG RefSeqGene LRG_58

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.493T=0.507
1000GenomesAmericanSub694C=0.620T=0.380
1000GenomesEast AsianSub1008C=0.632T=0.368
1000GenomesEuropeSub1006C=0.572T=0.428
1000GenomesGlobalStudy-wide5008C=0.540T=0.460
1000GenomesSouth AsianSub978C=0.410T=0.590
The Genome Aggregation DatabaseAfricanSub8712C=0.501T=0.499
The Genome Aggregation DatabaseAmericanSub838C=0.640T=0.360
The Genome Aggregation DatabaseEast AsianSub1614C=0.622T=0.378
The Genome Aggregation DatabaseEuropeSub18462C=0.543T=0.456
The Genome Aggregation DatabaseGlobalStudy-wide29928C=0.539T=0.460
The Genome Aggregation DatabaseOtherSub302C=0.660T=0.340
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.541T=0.458
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs28592420.0000673alcoholismpha002891
rs28592420.0000673alcohol dependence20201924

eQTL of rs2859242 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2859242 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.