SNP Detail Info-rs2877626

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LOC101928046 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0031 (931/30002,GnomAD)
G=0046 (1338/29118,TOPMED)
G=0032 (159/5008,1000G)
G=0001 (2/3854,ALSPAC)
G=0001 (4/3708,TWINSUK)

Position: chr14:70288090 (GRCh38.p7) (14q24.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 8 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 14	NC_000014.9:g.70288090A>G
GRCh37.p13 chr 14	NC_000014.8:g.70754807A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC101928046 transcript variant X1	XR_943988.1:n.	N/A	Intron Variant
LOC101928046 transcript variant X2	XR_943989.1:n.	N/A	Intron Variant
LOC101928046 transcript variant X3	XR_943990.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.887	G=0.113
1000Genomes	American	Sub	694	A=0.990	G=0.010
1000Genomes	East Asian	Sub	1008	A=1.000	G=0.000
1000Genomes	Europe	Sub	1006	A=0.999	G=0.001
1000Genomes	Global	Study-wide	5008	A=0.968	G=0.032
1000Genomes	South Asian	Sub	978	A=1.000	G=0.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.999	G=0.001
The Genome Aggregation Database	African	Sub	8732	A=0.895	G=0.105
The Genome Aggregation Database	American	Sub	838	A=0.990	G=0.010
The Genome Aggregation Database	East Asian	Sub	1622	A=1.000	G=0.000
The Genome Aggregation Database	Europe	Sub	18508	A=0.999	G=0.000
The Genome Aggregation Database	Global	Study-wide	30002	A=0.969	G=0.031
The Genome Aggregation Database	Other	Sub	302	A=1.000	G=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.954	G=0.046
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.999	G=0.001

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2877626	0.000617	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr14	70721135	70721676	E067	-33131
chr14	70721135	70721676	E068	-33131
chr14	70721135	70721676	E069	-33131
chr14	70721135	70721676	E070	-33131
chr14	70721135	70721676	E071	-33131
chr14	70721135	70721676	E073	-33131
chr14	70721135	70721676	E082	-33131
chr14	70721782	70722280	E082	-32527

rs2877626