SNP Detail Info-rs28797478

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0148 (3034/20488,GnomAD)
A=0153 (578/3775,1000G)
A=0103 (381/3708,TWINSUK)
A=0102 (294/2889,ALSPAC)

Position: chrX:37016604 (GRCh38.p7) (Xp21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 3 Promoters around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.713	A=0.287
1000Genomes	American	Sub	524	G=0.870	A=0.130
1000Genomes	East Asian	Sub	764	G=0.960	A=0.040
1000Genomes	Europe	Sub	766	G=0.910	A=0.090
1000Genomes	Global	Study-wide	3775	G=0.847	A=0.153
1000Genomes	South Asian	Sub	718	G=0.830	A=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.898	A=0.102
The Genome Aggregation Database	African	Sub	5733	G=0.743	A=0.257
The Genome Aggregation Database	American	Sub	584	G=0.860	A=0.140
The Genome Aggregation Database	East Asian	Sub	1033	G=0.974	A=0.026
The Genome Aggregation Database	Europe	Sub	12951	G=0.889	A=0.111
The Genome Aggregation Database	Global	Study-wide	20488	G=0.851	A=0.148
The Genome Aggregation Database	Other	Sub	187	G=0.930	A=0.070
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.897	A=0.103

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs28797478	0.00041	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chrX	880890	881510	E070	48632
chrX	834868	835017	E082	2610
chrX	880890	881510	E082	48632

rs28797478