SNP Detail Info-rs2880439

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0198 (5931/29950,GnomAD)
G=0173 (5057/29118,TOPMED)
G=0160 (802/5008,1000G)
G=0252 (972/3854,ALSPAC)
G=0255 (944/3708,TWINSUK)

Position: chr8:105256967 (GRCh38.p7) (8q23.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 8	NC_000008.11:g.105256967A>G
GRCh37.p13 chr 8	NC_000008.10:g.106269195A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.972	G=0.028
1000Genomes	American	Sub	694	A=0.660	G=0.340
1000Genomes	East Asian	Sub	1008	A=0.879	G=0.121
1000Genomes	Europe	Sub	1006	A=0.743	G=0.257
1000Genomes	Global	Study-wide	5008	A=0.840	G=0.160
1000Genomes	South Asian	Sub	978	A=0.850	G=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.748	G=0.252
The Genome Aggregation Database	African	Sub	8724	A=0.942	G=0.058
The Genome Aggregation Database	American	Sub	834	A=0.660	G=0.340
The Genome Aggregation Database	East Asian	Sub	1616	A=0.910	G=0.090
The Genome Aggregation Database	Europe	Sub	18474	A=0.733	G=0.266
The Genome Aggregation Database	Global	Study-wide	29950	A=0.802	G=0.198
The Genome Aggregation Database	Other	Sub	302	A=0.770	G=0.230
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.826	G=0.173
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.745	G=0.255

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2880439	0.000912	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs2880439