rs2880439

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0198 (5931/29950,GnomAD)
G=0173 (5057/29118,TOPMED)
G=0160 (802/5008,1000G)
G=0252 (972/3854,ALSPAC)
G=0255 (944/3708,TWINSUK)
chr8:105256967 (GRCh38.p7) (8q23.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.105256967A>G
GRCh37.p13 chr 8NC_000008.10:g.106269195A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.972G=0.028
1000GenomesAmericanSub694A=0.660G=0.340
1000GenomesEast AsianSub1008A=0.879G=0.121
1000GenomesEuropeSub1006A=0.743G=0.257
1000GenomesGlobalStudy-wide5008A=0.840G=0.160
1000GenomesSouth AsianSub978A=0.850G=0.150
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.748G=0.252
The Genome Aggregation DatabaseAfricanSub8724A=0.942G=0.058
The Genome Aggregation DatabaseAmericanSub834A=0.660G=0.340
The Genome Aggregation DatabaseEast AsianSub1616A=0.910G=0.090
The Genome Aggregation DatabaseEuropeSub18474A=0.733G=0.266
The Genome Aggregation DatabaseGlobalStudy-wide29950A=0.802G=0.198
The Genome Aggregation DatabaseOtherSub302A=0.770G=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.826G=0.173
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.745G=0.255
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs28804390.000912alcohol dependence21314694

eQTL of rs2880439 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2880439 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.