rs2880705

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0055 (1653/29902,GnomAD)
C=0066 (1923/29118,TOPMED)
C=0054 (268/5008,1000G)
C=0069 (267/3854,ALSPAC)
C=0067 (247/3708,TWINSUK)
chr13:87201706 (GRCh38.p7) (13q31.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87201706T>C
GRCh37.p13 chr 13NC_000013.10:g.87853961T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.951C=0.049
1000GenomesAmericanSub694T=0.940C=0.060
1000GenomesEast AsianSub1008T=0.968C=0.032
1000GenomesEuropeSub1006T=0.939C=0.061
1000GenomesGlobalStudy-wide5008T=0.946C=0.054
1000GenomesSouth AsianSub978T=0.930C=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.931C=0.069
The Genome Aggregation DatabaseAfricanSub8726T=0.943C=0.057
The Genome Aggregation DatabaseAmericanSub834T=0.960C=0.040
The Genome Aggregation DatabaseEast AsianSub1612T=0.955C=0.045
The Genome Aggregation DatabaseEuropeSub18430T=0.945C=0.054
The Genome Aggregation DatabaseGlobalStudy-wide29902T=0.944C=0.055
The Genome Aggregation DatabaseOtherSub300T=0.870C=0.130
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.934C=0.066
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.933C=0.067
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs28807056.63E-05alcohol consumption23743675

eQTL of rs2880705 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2880705 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.