rs28821642

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0136 (4089/29926,GnomAD)
T=0174 (5067/29118,TOPMED)
T=0148 (741/5008,1000G)
T=0104 (400/3854,ALSPAC)
T=0107 (395/3708,TWINSUK)
chr3:164841642 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164841642C>T
GRCh37.p13 chr 3NC_000003.11:g.164559430C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.722T=0.278
1000GenomesAmericanSub694C=0.920T=0.080
1000GenomesEast AsianSub1008C=0.905T=0.095
1000GenomesEuropeSub1006C=0.907T=0.093
1000GenomesGlobalStudy-wide5008C=0.852T=0.148
1000GenomesSouth AsianSub978C=0.870T=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.896T=0.104
The Genome Aggregation DatabaseAfricanSub8710C=0.746T=0.254
The Genome Aggregation DatabaseAmericanSub838C=0.940T=0.060
The Genome Aggregation DatabaseEast AsianSub1602C=0.898T=0.102
The Genome Aggregation DatabaseEuropeSub18474C=0.911T=0.088
The Genome Aggregation DatabaseGlobalStudy-wide29926C=0.863T=0.136
The Genome Aggregation DatabaseOtherSub302C=0.910T=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.826T=0.174
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.893T=0.107
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs288216422.07E-08alcohol dependence (age at onset)24962325

eQTL of rs28821642 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs28821642 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.