rs28887513

Homo sapiens
A>C / A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0195 (5843/29916,GnomAD)
G=0152 (762/5008,1000G)
G=0297 (1144/3854,ALSPAC)
G=0306 (1134/3708,TWINSUK)
chr15:37479865 (GRCh38.p7) (15q14)
CD
GWASdb2
1   publication(s)
See rs on genome
44 Enhancers around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.37479865A>C
GRCh38.p7 chr 15NC_000015.10:g.37479865A>G
GRCh37.p13 chr 15NC_000015.9:g.37772066A>C
GRCh37.p13 chr 15NC_000015.9:g.37772066A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.983G=0.017
1000GenomesAmericanSub694A=0.810G=0.190
1000GenomesEast AsianSub1008A=0.968G=0.032
1000GenomesEuropeSub1006A=0.716G=0.284
1000GenomesGlobalStudy-wide5008A=0.848G=0.152
1000GenomesSouth AsianSub978A=0.700G=0.300
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.703G=0.297
The Genome Aggregation DatabaseAfricanSub8724A=0.939G=0.060
The Genome Aggregation DatabaseAmericanSub836A=0.790G=0.21,
The Genome Aggregation DatabaseEast AsianSub1614A=0.977G=0.023
The Genome Aggregation DatabaseEuropeSub18440A=0.729G=0.270
The Genome Aggregation DatabaseGlobalStudy-wide29916A=0.804G=0.195
The Genome Aggregation DatabaseOtherSub302A=0.610G=0.39,
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.694G=0.306
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs288875133.42E-05cocaine dependence23958962

eQTL of rs28887513 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs28887513 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr153669865136698743E0680
chr153669883136699099E068147
chr153669921736699312E068533
chr153669975136700361E0681067
chr153669975136700361E0691067
chr153672929836729348E06930614
chr153673072336730778E06932039
chr153673084636731047E06932162
chr153665031436650679E070-48005
chr153665086436651034E070-47650
chr153665109736651200E070-47484
chr153665124836651301E070-47383
chr153665136836651425E070-47259
chr153665162136651735E070-46949
chr153669865136698743E0700
chr153669883136699099E070147
chr153669921736699312E070533
chr153669975136700361E0701067
chr153673072336730778E07032039
chr153673084636731047E07032162
chr153673127936731368E07032595
chr153673145036731787E07032766
chr153665531236655405E071-43279
chr153665562236655872E071-42812
chr153669883136699099E071147
chr153669921736699312E071533
chr153669975136700361E0711067
chr153672929836729348E07130614
chr153673084636731047E07132162
chr153673084636731047E07232162
chr153673127936731368E07232595
chr153673145036731787E07232766
chr153669883136699099E073147
chr153665531236655405E074-43279
chr153665562236655872E074-42812
chr153665599336656098E074-42586
chr153669865136698743E0740
chr153669883136699099E074147
chr153669921736699312E074533
chr153669975136700361E0741067
chr153672929836729348E07430614
chr153673072336730778E07432039
chr153672696136727011E08128277
chr153669975136700361E0821067









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr153673041136730584E07131727
chr153673041136730584E07231727