rs2890930

Homo sapiens
A>C / A>G
None
Check p-value
SNV (Single Nucleotide Variation)
C=0088 (2628/29842,GnomAD)
C=0063 (1834/29118,TOPMED)
C=0111 (555/5008,1000G)
C=0085 (327/3854,ALSPAC)
C=0096 (355/3708,TWINSUK)
chr9:10861806 (GRCh38.p7) (9p23)
ND
GWASdb2
1   publication(s)
See rs on genome
142 Enhancers around
25 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.10861806A>C
GRCh38.p7 chr 9NC_000009.12:g.10861806A>G
GRCh37.p13 chr 9NC_000009.11:g.10861806A>C
GRCh37.p13 chr 9NC_000009.11:g.10861806A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.998C=0.002
1000GenomesAmericanSub694A=0.960C=0.040
1000GenomesEast AsianSub1008A=0.823C=0.177
1000GenomesEuropeSub1006A=0.888C=0.112
1000GenomesGlobalStudy-wide5008A=0.889C=0.111
1000GenomesSouth AsianSub978A=0.760C=0.240
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.915C=0.085
The Genome Aggregation DatabaseAfricanSub8726A=0.982G=0.000
The Genome Aggregation DatabaseAmericanSub830A=0.940G=0.00,
The Genome Aggregation DatabaseEast AsianSub1586A=0.846G=0.000
The Genome Aggregation DatabaseEuropeSub18398A=0.882G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29842A=0.911G=0.000
The Genome Aggregation DatabaseOtherSub302A=0.940G=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.937C=0.063
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.904C=0.096
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs28909300.00000923Alcohol dependence20158304
rs28909300.0000117Comorbid alcohol and nicotine dependence20158304

eQTL of rs2890930 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2890930 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9113775925113776165E067-44649
chr9113776357113776407E067-44407
chr9113778200113779557E067-41257
chr9113791432113791834E067-28980
chr9113792541113792601E067-28213
chr9113792767113793147E067-27667
chr9113793486113793653E067-27161
chr9113793810113793886E067-26928
chr9113794273113794354E067-26460
chr9113827868113827989E0677054
chr9113773195113773333E068-47481
chr9113773358113773408E068-47406
chr9113773610113773678E068-47136
chr9113775576113775636E068-45178
chr9113775709113775923E068-44891
chr9113775925113776165E068-44649
chr9113776357113776407E068-44407
chr9113777640113777690E068-43124
chr9113778200113779557E068-41257
chr9113791432113791834E068-28980
chr9113792415113792489E068-28325
chr9113792541113792601E068-28213
chr9113792767113793147E068-27667
chr9113793810113793886E068-26928
chr9113794273113794354E068-26460
chr9113796146113796382E068-24432
chr9113827435113827489E0686621
chr9113827673113827776E0686859
chr9113827868113827989E0687054
chr9113828121113828200E0687307
chr9113828269113828329E0687455
chr9113828391113828459E0687577
chr9113856688113858134E06835874
chr9113774546113774604E069-46210
chr9113774666113774716E069-46098
chr9113774826113774895E069-45919
chr9113775122113775209E069-45605
chr9113775295113775345E069-45469
chr9113775432113775540E069-45274
chr9113775576113775636E069-45178
chr9113775709113775923E069-44891
chr9113775925113776165E069-44649
chr9113776357113776407E069-44407
chr9113777640113777690E069-43124
chr9113778200113779557E069-41257
chr9113791011113791061E069-29753
chr9113792415113792489E069-28325
chr9113792541113792601E069-28213
chr9113792767113793147E069-27667
chr9113793486113793653E069-27161
chr9113793810113793886E069-26928
chr9113794273113794354E069-26460
chr9113796146113796382E069-24432
chr9113796146113796382E070-24432
chr9113796427113796504E070-24310
chr9113796535113796788E070-24026
chr9113819489113819546E070-1268
chr9113772547113773122E071-47692
chr9113773195113773333E071-47481
chr9113773358113773408E071-47406
chr9113773610113773678E071-47136
chr9113774546113774604E071-46210
chr9113774666113774716E071-46098
chr9113774826113774895E071-45919
chr9113775122113775209E071-45605
chr9113775295113775345E071-45469
chr9113775432113775540E071-45274
chr9113775576113775636E071-45178
chr9113775709113775923E071-44891
chr9113775925113776165E071-44649
chr9113776357113776407E071-44407
chr9113777640113777690E071-43124
chr9113778200113779557E071-41257
chr9113791432113791834E071-28980
chr9113792415113792489E071-28325
chr9113792541113792601E071-28213
chr9113792767113793147E071-27667
chr9113793486113793653E071-27161
chr9113793810113793886E071-26928
chr9113794273113794354E071-26460
chr9113795599113795649E071-25165
chr9113795700113795774E071-25040
chr9113795829113795883E071-24931
chr9113827868113827989E0717054
chr9113828121113828200E0717307
chr9113828269113828329E0717455
chr9113828391113828459E0717577
chr9113774546113774604E072-46210
chr9113774666113774716E072-46098
chr9113775576113775636E072-45178
chr9113775709113775923E072-44891
chr9113775925113776165E072-44649
chr9113776357113776407E072-44407
chr9113777640113777690E072-43124
chr9113778200113779557E072-41257
chr9113789648113789732E072-31082
chr9113789857113790071E072-30743
chr9113791432113791834E072-28980
chr9113792415113792489E072-28325
chr9113792541113792601E072-28213
chr9113792767113793147E072-27667
chr9113775576113775636E073-45178
chr9113775709113775923E073-44891
chr9113775925113776165E073-44649
chr9113776357113776407E073-44407
chr9113778200113779557E073-41257
chr9113791432113791834E073-28980
chr9113794273113794354E073-26460
chr9113772547113773122E074-47692
chr9113773195113773333E074-47481
chr9113773358113773408E074-47406
chr9113773610113773678E074-47136
chr9113774546113774604E074-46210
chr9113774666113774716E074-46098
chr9113774826113774895E074-45919
chr9113775122113775209E074-45605
chr9113775295113775345E074-45469
chr9113775432113775540E074-45274
chr9113775576113775636E074-45178
chr9113775709113775923E074-44891
chr9113775925113776165E074-44649
chr9113776357113776407E074-44407
chr9113777640113777690E074-43124
chr9113778200113779557E074-41257
chr9113780419113780469E074-40345
chr9113791011113791061E074-29753
chr9113791432113791834E074-28980
chr9113792415113792489E074-28325
chr9113792541113792601E074-28213
chr9113792767113793147E074-27667
chr9113793486113793653E074-27161
chr9113793810113793886E074-26928
chr9113794273113794354E074-26460
chr9113795599113795649E074-25165
chr9113795700113795774E074-25040
chr9113795829113795883E074-24931
chr9113796146113796382E074-24432
chr9113797517113797675E074-23139
chr9113797848113798203E074-22611
chr9113827435113827489E0746621
chr9113827673113827776E0746859
chr9113827868113827989E0747054








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr9113796878113797439E067-23375
chr9113798382113802165E067-18649
chr9113826496113826632E0675682
chr9113826954113827110E0676140
chr9113796878113797439E068-23375
chr9113798382113802165E068-18649
chr9113796878113797439E069-23375
chr9113798382113802165E069-18649
chr9113826496113826632E0695682
chr9113826954113827110E0696140
chr9113796878113797439E071-23375
chr9113798382113802165E071-18649
chr9113826496113826632E0715682
chr9113826954113827110E0716140
chr9113829854113830060E0719040
chr9113830073113830451E0719259
chr9113796878113797439E072-23375
chr9113798382113802165E072-18649
chr9113826954113827110E0726140
chr9113796878113797439E073-23375
chr9113798382113802165E073-18649
chr9113796878113797439E074-23375
chr9113798382113802165E074-18649
chr9113826496113826632E0745682
chr9113826954113827110E0746140