rs2899699

Homo sapiens
G>T
ZNF609 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0007 (218/29984,GnomAD)
T=0007 (220/29118,TOPMED)
T=0007 (36/5008,1000G)
T=0015 (59/3854,ALSPAC)
T=0012 (46/3708,TWINSUK)
chr15:64620720 (GRCh38.p7) (15q22.31)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.64620720G>T
GRCh37.p13 chr 15NC_000015.9:g.64912919G>T

Gene: ZNF609, zinc finger protein 609(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF609 transcriptNM_015042.1:c.N/AIntron Variant
ZNF609 transcript variant X1XM_011521386.2:c.N/AIntron Variant
ZNF609 transcript variant X2XM_017022021.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.999T=0.001
1000GenomesAmericanSub694G=0.980T=0.020
1000GenomesEast AsianSub1008G=0.996T=0.004
1000GenomesEuropeSub1006G=0.984T=0.016
1000GenomesGlobalStudy-wide5008G=0.993T=0.007
1000GenomesSouth AsianSub978G=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.985T=0.015
The Genome Aggregation DatabaseAfricanSub8724G=0.997T=0.003
The Genome Aggregation DatabaseAmericanSub838G=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1618G=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18502G=0.990T=0.009
The Genome Aggregation DatabaseGlobalStudy-wide29984G=0.992T=0.007
The Genome Aggregation DatabaseOtherSub302G=0.990T=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.992T=0.007
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.988T=0.012
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs28996998.27E-05alcohol consumption23953852

eQTL of rs2899699 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2899699 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr156486642564867102E067-45817
chr156486716964867308E067-45611
chr156486737064867505E067-45414
chr156487784864877996E067-34923
chr156487810964878223E067-34696
chr156487859564878781E067-34138
chr156487880764878901E067-34018
chr156487891764879043E067-33876
chr156487907064879124E067-33795
chr156487914264879278E067-33641
chr156487933464879473E067-33446
chr156490292164903013E067-9906
chr156490306664903124E067-9795
chr156490325764903325E067-9594
chr156490338264903726E067-9193
chr156491035464910404E067-2515
chr156491042764910549E067-2370
chr156491056464910619E067-2300
chr156491072464910788E067-2131
chr156491079764910963E067-1956
chr156491096764911030E067-1889
chr156491124564911318E067-1601
chr156491169864911787E067-1132
chr156491185264912079E067-840
chr156491208464912542E067-377
chr156491254364913098E0670
chr156491338964913475E067470
chr156491569064915987E0672771
chr156491605564916153E0673136
chr156491643264916522E0673513
chr156491655264916737E0673633
chr156492619664928832E06713277
chr156492885164929063E06715932
chr156492910564929206E06716186
chr156493149564931814E06718576
chr156493188064931954E06718961
chr156495993764960379E06747018
chr156486642564867102E068-45817
chr156486716964867308E068-45611
chr156487859564878781E068-34138
chr156487880764878901E068-34018
chr156487891764879043E068-33876
chr156487907064879124E068-33795
chr156487914264879278E068-33641
chr156487933464879473E068-33446
chr156488868064888724E068-24195
chr156489030664890411E068-22508
chr156489051164890643E068-22276
chr156489338664893444E068-19475
chr156489353864893607E068-19312
chr156489378664893830E068-19089
chr156489388264894021E068-18898
chr156489404164894101E068-18818
chr156489419264894295E068-18624
chr156489441964894943E068-17976
chr156490338264903726E068-9193
chr156491056464910619E068-2300
chr156491072464910788E068-2131
chr156491079764910963E068-1956
chr156491096764911030E068-1889
chr156491208464912542E068-377
chr156491254364913098E0680
chr156491338964913475E068470
chr156491364864913698E068729
chr156491428464914351E0681365
chr156491569064915987E0682771
chr156491605564916153E0683136
chr156492302364923206E06810104
chr156492619664928832E06813277
chr156492885164929063E06815932
chr156493149564931814E06818576
chr156493188064931954E06818961
chr156493201264932156E06819093
chr156493232664932421E06819407
chr156493246264933255E06819543
chr156495993764960379E06847018
chr156496042664960629E06847507
chr156486586764866051E069-46868
chr156486618764866364E069-46555
chr156486642564867102E069-45817
chr156486716964867308E069-45611
chr156487880764878901E069-34018
chr156487891764879043E069-33876
chr156487907064879124E069-33795
chr156487914264879278E069-33641
chr156487933464879473E069-33446
chr156489012964890180E069-22739
chr156489030664890411E069-22508
chr156489338664893444E069-19475
chr156489353864893607E069-19312
chr156489378664893830E069-19089
chr156489388264894021E069-18898
chr156489404164894101E069-18818
chr156489419264894295E069-18624
chr156490338264903726E069-9193
chr156491035464910404E069-2515
chr156491042764910549E069-2370
chr156491056464910619E069-2300
chr156491072464910788E069-2131
chr156491079764910963E069-1956
chr156491096764911030E069-1889
chr156491124564911318E069-1601
chr156491169864911787E069-1132
chr156491185264912079E069-840
chr156491208464912542E069-377
chr156491254364913098E0690
chr156491338964913475E069470
chr156491605564916153E0693136
chr156491643264916522E0693513
chr156491655264916737E0693633
chr156491683864916935E0693919
chr156492273764922892E0699818
chr156492302364923206E06910104
chr156492322664923461E06910307
chr156492352164923621E06910602
chr156492619664928832E06913277
chr156492885164929063E06915932
chr156493149564931814E06918576
chr156495726564957315E06944346
chr156495735364957408E06944434
chr156495749764957664E06944578
chr156495993764960379E06947018
chr156486642564867102E070-45817
chr156486716964867308E070-45611
chr156489051164890643E070-22276
chr156489154964891809E070-21110
chr156489193664892350E070-20569
chr156489301264893073E070-19846
chr156489311364893294E070-19625
chr156491079764910963E070-1956
chr156491096764911030E070-1889
chr156491124564911318E070-1601
chr156491169864911787E070-1132
chr156491185264912079E070-840
chr156491208464912542E070-377
chr156491254364913098E0700
chr156491338964913475E070470
chr156492302364923206E07010104
chr156492322664923461E07010307
chr156492352164923621E07010602
chr156492551964925799E07012600
chr156492611664926166E07013197
chr156492619664928832E07013277
chr156492885164929063E07015932
chr156492910564929206E07016186
chr156493149564931814E07018576
chr156493188064931954E07018961
chr156493201264932156E07019093
chr156486642564867102E071-45817
chr156486716964867308E071-45611
chr156486737064867505E071-45414
chr156487439164874474E071-38445
chr156487452764874764E071-38155
chr156487479064874859E071-38060
chr156487859564878781E071-34138
chr156487880764878901E071-34018
chr156487891764879043E071-33876
chr156487907064879124E071-33795
chr156487914264879278E071-33641
chr156487933464879473E071-33446
chr156488868064888724E071-24195
chr156488888764890061E071-22858
chr156489012964890180E071-22739
chr156489154964891809E071-21110
chr156489193664892350E071-20569
chr156489301264893073E071-19846
chr156489311364893294E071-19625
chr156489338664893444E071-19475
chr156489353864893607E071-19312
chr156489378664893830E071-19089
chr156489388264894021E071-18898
chr156489404164894101E071-18818
chr156489419264894295E071-18624
chr156490325764903325E071-9594
chr156490338264903726E071-9193
chr156491035464910404E071-2515
chr156491042764910549E071-2370
chr156491056464910619E071-2300
chr156491072464910788E071-2131
chr156491079764910963E071-1956
chr156491096764911030E071-1889
chr156491124564911318E071-1601
chr156491169864911787E071-1132
chr156491185264912079E071-840
chr156491208464912542E071-377
chr156491254364913098E0710
chr156491338964913475E071470
chr156491364864913698E071729
chr156491428464914351E0711365
chr156492302364923206E07110104
chr156492322664923461E07110307
chr156492352164923621E07110602
chr156492619664928832E07113277
chr156492885164929063E07115932
chr156492910564929206E07116186
chr156493149564931814E07118576
chr156493188064931954E07118961
chr156493201264932156E07119093
chr156493232664932421E07119407
chr156493246264933255E07119543
chr156495726564957315E07144346
chr156495735364957408E07144434
chr156495749764957664E07144578
chr156486642564867102E072-45817
chr156487628864876332E072-36587
chr156487633664876455E072-36464
chr156487859564878781E072-34138
chr156487880764878901E072-34018
chr156487891764879043E072-33876
chr156487907064879124E072-33795
chr156487914264879278E072-33641
chr156487933464879473E072-33446
chr156488888764890061E072-22858
chr156489012964890180E072-22739
chr156489030664890411E072-22508
chr156489051164890643E072-22276
chr156489154964891809E072-21110
chr156489193664892350E072-20569
chr156489301264893073E072-19846
chr156489311364893294E072-19625
chr156489338664893444E072-19475
chr156490338264903726E072-9193
chr156491208464912542E072-377
chr156491254364913098E0720
chr156491338964913475E072470
chr156491643264916522E0723513
chr156491655264916737E0723633
chr156492273764922892E0729818
chr156492302364923206E07210104
chr156492322664923461E07210307
chr156492352164923621E07210602
chr156492408464924128E07211165
chr156492440464924469E07211485
chr156492619664928832E07213277
chr156492885164929063E07215932
chr156493149564931814E07218576
chr156493188064931954E07218961
chr156495726564957315E07244346
chr156495735364957408E07244434
chr156486642564867102E073-45817
chr156486716964867308E073-45611
chr156487880764878901E073-34018
chr156487891764879043E073-33876
chr156487907064879124E073-33795
chr156487914264879278E073-33641
chr156487933464879473E073-33446
chr156488888764890061E073-22858
chr156489012964890180E073-22739
chr156489030664890411E073-22508
chr156491096764911030E073-1889
chr156491185264912079E073-840
chr156491208464912542E073-377
chr156491254364913098E0730
chr156491643264916522E0733513
chr156491655264916737E0733633
chr156491683864916935E0733919
chr156492619664928832E07313277
chr156492885164929063E07315932
chr156493149564931814E07318576
chr156493188064931954E07318961
chr156493201264932156E07319093
chr156486642564867102E074-45817
chr156486716964867308E074-45611
chr156486737064867505E074-45414
chr156487439164874474E074-38445
chr156487452764874764E074-38155
chr156487628864876332E074-36587
chr156487633664876455E074-36464
chr156487784864877996E074-34923
chr156487859564878781E074-34138
chr156487880764878901E074-34018
chr156487891764879043E074-33876
chr156488888764890061E074-22858
chr156489012964890180E074-22739
chr156489030664890411E074-22508
chr156489051164890643E074-22276
chr156489154964891809E074-21110
chr156489193664892350E074-20569
chr156489338664893444E074-19475
chr156489353864893607E074-19312
chr156489378664893830E074-19089
chr156489388264894021E074-18898
chr156489404164894101E074-18818
chr156489419264894295E074-18624
chr156490338264903726E074-9193
chr156491007364910173E074-2746
chr156491035464910404E074-2515
chr156491042764910549E074-2370
chr156491056464910619E074-2300
chr156491072464910788E074-2131
chr156491079764910963E074-1956
chr156491096764911030E074-1889
chr156491124564911318E074-1601
chr156491169864911787E074-1132
chr156491185264912079E074-840
chr156491208464912542E074-377
chr156491254364913098E0740
chr156491338964913475E074470
chr156492273764922892E0749818
chr156492302364923206E07410104
chr156492322664923461E07410307
chr156492352164923621E07410602
chr156492619664928832E07413277
chr156492885164929063E07415932
chr156492910564929206E07416186
chr156493149564931814E07418576
chr156493188064931954E07418961
chr156493201264932156E07419093
chr156493246264933255E07419543
chr156495726564957315E07444346
chr156495735364957408E07444434
chr156495749764957664E07444578
chr156495993764960379E07447018
chr156496042664960629E07447507
chr156488888764890061E081-22858
chr156489012964890180E081-22739
chr156489030664890411E081-22508
chr156489051164890643E081-22276
chr156489193664892350E081-20569
chr156491056464910619E081-2300
chr156491072464910788E081-2131
chr156491079764910963E081-1956
chr156491096764911030E081-1889
chr156491124564911318E081-1601
chr156491569064915987E0812771
chr156491605564916153E0813136
chr156491643264916522E0813513
chr156491655264916737E0813633
chr156491683864916935E0813919
chr156492611664926166E08113197
chr156492619664928832E08113277
chr156493149564931814E08118576
chr156493188064931954E08118961
chr156486642564867102E082-45817
chr156486716964867308E082-45611
chr156486737064867505E082-45414
chr156488800464888091E082-24828
chr156489030664890411E082-22508
chr156489051164890643E082-22276
chr156489154964891809E082-21110
chr156489193664892350E082-20569
chr156491035464910404E082-2515
chr156491042764910549E082-2370
chr156491056464910619E082-2300
chr156491072464910788E082-2131
chr156491079764910963E082-1956
chr156491096764911030E082-1889
chr156491124564911318E082-1601
chr156491169864911787E082-1132
chr156491185264912079E082-840
chr156491208464912542E082-377
chr156491569064915987E0822771
chr156491605564916153E0823136
chr156492322664923461E08210307
chr156492619664928832E08213277
chr156492885164929063E08215932
chr156492910564929206E08216186
chr156493149564931814E08218576