rs2911292

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0427 (12735/29804,GnomAD)
T=0420 (12248/29118,TOPMED)
T=0411 (2057/5008,1000G)
T=0367 (1415/3854,ALSPAC)
T=0366 (1357/3708,TWINSUK)
chr16:62547042 (GRCh38.p7) (16q21)
ND
GWASdb2
1   publication(s)
See rs on genome
89 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.62547042C>T
GRCh37.p13 chr 16NC_000016.9:g.62580946C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.436T=0.564
1000GenomesAmericanSub694C=0.770T=0.230
1000GenomesEast AsianSub1008C=0.599T=0.401
1000GenomesEuropeSub1006C=0.638T=0.362
1000GenomesGlobalStudy-wide5008C=0.589T=0.411
1000GenomesSouth AsianSub978C=0.610T=0.390
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.633T=0.367
The Genome Aggregation DatabaseAfricanSub8682C=0.462T=0.538
The Genome Aggregation DatabaseAmericanSub836C=0.800T=0.200
The Genome Aggregation DatabaseEast AsianSub1526C=0.613T=0.387
The Genome Aggregation DatabaseEuropeSub18458C=0.610T=0.389
The Genome Aggregation DatabaseGlobalStudy-wide29804C=0.572T=0.427
The Genome Aggregation DatabaseOtherSub302C=0.630T=0.370
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.579T=0.420
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.634T=0.366
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs29112922.34E-05nicotine smoking19268276

eQTL of rs2911292 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2911292 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr166258042662580470E067-476
chr166258053662581013E0670
chr166258113562581186E067189
chr166258123862581464E067292
chr166258150062581559E067554
chr166258409362584133E0673147
chr166258452562584575E0673579
chr166258458462584641E0673638
chr166261701362617138E06736067
chr166261715062617284E06736204
chr166261736162617414E06736415
chr166261749862617580E06736552
chr166261930662619491E06738360
chr166261989162620020E06738945
chr166258053662581013E0680
chr166258113562581186E068189
chr166258123862581464E068292
chr166258150062581559E068554
chr166258386362583928E0682917
chr166258409362584133E0683147
chr166258452562584575E0683579
chr166258458462584641E0683638
chr166261715062617284E06836204
chr166261736162617414E06836415
chr166261749862617580E06836552
chr166258113562581186E069189
chr166258123862581464E069292
chr166258150062581559E069554
chr166258179062581840E069844
chr166258208262582289E0691136
chr166258409362584133E0693147
chr166258452562584575E0693579
chr166258458462584641E0693638
chr166261701362617138E06936067
chr166261715062617284E06936204
chr166261736162617414E06936415
chr166261749862617580E06936552
chr166261930662619491E06938360
chr166261989162620020E06938945
chr166262040262620442E06939456
chr166258053662581013E0700
chr166257440362574671E071-6275
chr166258386362583928E0712917
chr166258409362584133E0713147
chr166258452562584575E0713579
chr166258458462584641E0713638
chr166261701362617138E07136067
chr166261715062617284E07136204
chr166261930662619491E07138360
chr166261989162620020E07138945
chr166262040262620442E07139456
chr166258053662581013E0720
chr166261103062611090E07230084
chr166261701362617138E07236067
chr166261715062617284E07236204
chr166261736162617414E07236415
chr166261749862617580E07236552
chr166261989162620020E07238945
chr166258409362584133E0733147
chr166261989162620020E07338945
chr166262040262620442E07339456
chr166257477462574923E074-6023
chr166258053662581013E0740
chr166258113562581186E074189
chr166258123862581464E074292
chr166258150062581559E074554
chr166258179062581840E074844
chr166258208262582289E0741136
chr166258251562582612E0741569
chr166258386362583928E0742917
chr166258409362584133E0743147
chr166258452562584575E0743579
chr166258458462584641E0743638
chr166261103062611090E07430084
chr166261715062617284E07436204
chr166261736162617414E07436415
chr166261749862617580E07436552
chr166261930662619491E07438360
chr166261989162620020E07438945
chr166262040262620442E07439456
chr166257440362574671E081-6275
chr166257477462574923E081-6023
chr166258053662581013E0810
chr166258113562581186E081189
chr166258123862581464E081292
chr166258150062581559E081554
chr166258179062581840E081844
chr166259912762599321E08118181
chr166259936562599451E08118419