SNP Detail Info-rs2911411

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0426 (12423/29118,TOPMED)
A=0482 (2413/5008,1000G)

Position: chr16:82197520 (GRCh38.p7) (16q23.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 15 Enhancers around

Promoter: 10 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 16	NC_000016.10:g.82197520G>A
GRCh37.p13 chr 16	NC_000016.9:g.82231125G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.187	A=0.813
1000Genomes	American	Sub	694	G=0.530	A=0.470
1000Genomes	East Asian	Sub	1008	G=0.621	A=0.379
1000Genomes	Europe	Sub	1006	G=0.842	A=0.158
1000Genomes	Global	Study-wide	5008	G=0.518	A=0.482
1000Genomes	South Asian	Sub	978	G=0.520	A=0.480
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.573	A=0.426

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs2911411	1.75E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr16	82202381	82202446	E067	-28679
chr16	82223529	82224363	E068	-6762
chr16	82202381	82202446	E070	-28679
chr16	82202381	82202446	E071	-28679
chr16	82204678	82204761	E071	-26364
chr16	82223529	82224363	E071	-6762
chr16	82193965	82194250	E072	-36875
chr16	82202381	82202446	E072	-28679
chr16	82202381	82202446	E074	-28679
chr16	82222817	82223046	E074	-8079
chr16	82223529	82224363	E074	-6762
chr16	82194999	82195387	E081	-35738
chr16	82195682	82195722	E081	-35403
chr16	82202381	82202446	E081	-28679
chr16	82204678	82204761	E081	-26364

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr16	82203209	82204552	E067	-26573
chr16	82203209	82204552	E068	-26573
chr16	82203209	82204552	E069	-26573
chr16	82203209	82204552	E070	-26573
chr16	82203209	82204552	E071	-26573
chr16	82203209	82204552	E072	-26573
chr16	82203209	82204552	E073	-26573
chr16	82203209	82204552	E074	-26573
chr16	82203209	82204552	E081	-26573
chr16	82203209	82204552	E082	-26573

rs2911411