rs2915125

Homo sapiens
T>C
LOC105375147 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0447 (13385/29896,GnomAD)
C=0403 (11740/29118,TOPMED)
C=0355 (1778/5008,1000G)
T==0429 (1653/3854,ALSPAC)
T==0434 (1608/3708,TWINSUK)
chr7:9867081 (GRCh38.p7) (7p21.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.9867081T>C
GRCh37.p13 chr 7NC_000007.13:g.9906710T>C

Gene: LOC105375147, uncharacterized LOC105375147(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105375147 transcriptXR_927026.2:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.769C=0.231
1000GenomesAmericanSub694T=0.600C=0.400
1000GenomesEast AsianSub1008T=0.788C=0.212
1000GenomesEuropeSub1006T=0.459C=0.541
1000GenomesGlobalStudy-wide5008T=0.645C=0.355
1000GenomesSouth AsianSub978T=0.560C=0.440
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.429C=0.571
The Genome Aggregation DatabaseAfricanSub8706T=0.712C=0.288
The Genome Aggregation DatabaseAmericanSub838T=0.590C=0.410
The Genome Aggregation DatabaseEast AsianSub1604T=0.802C=0.198
The Genome Aggregation DatabaseEuropeSub18446T=0.455C=0.544
The Genome Aggregation DatabaseGlobalStudy-wide29896T=0.552C=0.447
The Genome Aggregation DatabaseOtherSub302T=0.450C=0.550
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.596C=0.403
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.434C=0.566
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs29151252.5E-05alcoholism (heaviness of drinking)21529783

eQTL of rs2915125 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2915125 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.