rs292203

Homo sapiens
C>G / C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0453 (13563/29918,GnomAD)
C==0480 (13978/29118,TOPMED)
C==0461 (2311/5008,1000G)
chr5:74210959 (GRCh38.p7) (5q13.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.74210959C>G
GRCh38.p7 chr 5NC_000005.10:g.74210959C>T
GRCh37.p13 chr 5NC_000005.9:g.73506784C>G
GRCh37.p13 chr 5NC_000005.9:g.73506784C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.182T=0.818
1000GenomesAmericanSub694C=0.530T=0.470
1000GenomesEast AsianSub1008C=0.525T=0.475
1000GenomesEuropeSub1006C=0.672T=0.328
1000GenomesGlobalStudy-wide5008C=0.461T=0.539
1000GenomesSouth AsianSub978C=0.510T=0.490
The Genome Aggregation DatabaseAfricanSub8720C=0.243G=0.000
The Genome Aggregation DatabaseAmericanSub834C=0.570G=0.00,
The Genome Aggregation DatabaseEast AsianSub1610C=0.513G=0.000
The Genome Aggregation DatabaseEuropeSub18454C=0.689G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29918C=0.546G=0.000
The Genome Aggregation DatabaseOtherSub300C=0.680G=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.480T=0.520
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs2922030.00062alcohol dependence20201924

eQTL of rs292203 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs292203 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.