rs2925009

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0347 (10402/29938,GnomAD)
G=0417 (12144/29118,TOPMED)
G=0410 (2051/5008,1000G)
G=0181 (699/3854,ALSPAC)
G=0183 (680/3708,TWINSUK)
chr8:40280820 (GRCh38.p7) (8p11.21)
AD
GWASCatalog
1   publication(s)
See rs on genome
25 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.40280820C>G
GRCh37.p13 chr 8NC_000008.10:g.40138339C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.274G=0.726
1000GenomesAmericanSub694C=0.750G=0.250
1000GenomesEast AsianSub1008C=0.649G=0.351
1000GenomesEuropeSub1006C=0.792G=0.208
1000GenomesGlobalStudy-wide5008C=0.590G=0.410
1000GenomesSouth AsianSub978C=0.640G=0.360
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.819G=0.181
The Genome Aggregation DatabaseAfricanSub8698C=0.308G=0.692
The Genome Aggregation DatabaseAmericanSub838C=0.790G=0.210
The Genome Aggregation DatabaseEast AsianSub1614C=0.621G=0.379
The Genome Aggregation DatabaseEuropeSub18486C=0.809G=0.191
The Genome Aggregation DatabaseGlobalStudy-wide29938C=0.652G=0.347
The Genome Aggregation DatabaseOtherSub302C=0.790G=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.582G=0.417
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.817G=0.183
PMID Title Author Journal
29460428Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.Gelernter JAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs29250093E-06response to alcohol29460428

eQTL of rs2925009 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2925009 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr84017747340177574E07039134
chr84017758240177730E07039243
chr84017779740177929E07039458
chr84018030040180420E07041961
chr84018042240180661E07042083
chr84018070740181357E07042368
chr84018146740181606E07043128
chr84018070740181357E07142368
chr84014024940140299E0811910
chr84014030840140446E0811969
chr84014050840140565E0812169
chr84014070240140919E0812363
chr84014104640141129E0812707
chr84015551040156459E08117171
chr84015662040156740E08118281
chr84015690740157051E08118568
chr84016253840162687E08124199
chr84016271940162997E08124380
chr84016306240163153E08124723
chr84018070740181357E08142368
chr84016271940162997E08224380
chr84016306240163153E08224723
chr84017553140175638E08237192
chr84017564140176079E08237302
chr84018070740181357E08242368