Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 15 | NC_000015.10:g.72306273G>A |
GRCh37.p13 chr 15 | NC_000015.9:g.72598614G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
CELF6 transcript variant 2 | NM_001172684.1:c. | N/A | Intron Variant |
CELF6 transcript variant 1 | NM_052840.4:c. | N/A | Intron Variant |
CELF6 transcript variant 3 | NM_001172685.1:c. | N/A | 5 Prime UTR Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.256 | A=0.744 |
1000Genomes | American | Sub | 694 | G=0.260 | A=0.740 |
1000Genomes | East Asian | Sub | 1008 | G=0.405 | A=0.595 |
1000Genomes | Europe | Sub | 1006 | G=0.198 | A=0.802 |
1000Genomes | Global | Study-wide | 5008 | G=0.277 | A=0.723 |
1000Genomes | South Asian | Sub | 978 | G=0.270 | A=0.730 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.217 | A=0.783 |
The Genome Aggregation Database | African | Sub | 8638 | G=0.260 | A=0.740 |
The Genome Aggregation Database | American | Sub | 836 | G=0.270 | A=0.730 |
The Genome Aggregation Database | East Asian | Sub | 1610 | G=0.443 | A=0.557 |
The Genome Aggregation Database | Europe | Sub | 18282 | G=0.205 | A=0.794 |
The Genome Aggregation Database | Global | Study-wide | 29666 | G=0.236 | A=0.763 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.220 | A=0.780 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.233 | A=0.766 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.233 | A=0.767 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2959930 | 0.000891 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr15 | 72562686 | 72562748 | E067 | -35866 |
chr15 | 72562968 | 72563022 | E067 | -35592 |
chr15 | 72563171 | 72563211 | E067 | -35403 |
chr15 | 72563313 | 72563523 | E067 | -35091 |
chr15 | 72566032 | 72566103 | E067 | -32511 |
chr15 | 72566152 | 72566528 | E067 | -32086 |
chr15 | 72599834 | 72599967 | E067 | 1220 |
chr15 | 72562686 | 72562748 | E068 | -35866 |
chr15 | 72562968 | 72563022 | E068 | -35592 |
chr15 | 72563171 | 72563211 | E068 | -35403 |
chr15 | 72563313 | 72563523 | E068 | -35091 |
chr15 | 72563584 | 72563704 | E068 | -34910 |
chr15 | 72600017 | 72600071 | E068 | 1403 |
chr15 | 72606402 | 72606452 | E068 | 7788 |
chr15 | 72562686 | 72562748 | E069 | -35866 |
chr15 | 72562968 | 72563022 | E069 | -35592 |
chr15 | 72563171 | 72563211 | E069 | -35403 |
chr15 | 72563313 | 72563523 | E069 | -35091 |
chr15 | 72563584 | 72563704 | E069 | -34910 |
chr15 | 72632825 | 72632979 | E069 | 34211 |
chr15 | 72562686 | 72562748 | E070 | -35866 |
chr15 | 72562968 | 72563022 | E070 | -35592 |
chr15 | 72563171 | 72563211 | E070 | -35403 |
chr15 | 72563313 | 72563523 | E070 | -35091 |
chr15 | 72563584 | 72563704 | E070 | -34910 |
chr15 | 72599834 | 72599967 | E070 | 1220 |
chr15 | 72600017 | 72600071 | E070 | 1403 |
chr15 | 72600159 | 72600223 | E070 | 1545 |
chr15 | 72608044 | 72608094 | E070 | 9430 |
chr15 | 72608416 | 72608584 | E070 | 9802 |
chr15 | 72613798 | 72613848 | E070 | 15184 |
chr15 | 72562968 | 72563022 | E071 | -35592 |
chr15 | 72563171 | 72563211 | E071 | -35403 |
chr15 | 72563313 | 72563523 | E071 | -35091 |
chr15 | 72563584 | 72563704 | E071 | -34910 |
chr15 | 72566032 | 72566103 | E071 | -32511 |
chr15 | 72566152 | 72566528 | E071 | -32086 |
chr15 | 72563313 | 72563523 | E072 | -35091 |
chr15 | 72563584 | 72563704 | E072 | -34910 |
chr15 | 72562686 | 72562748 | E073 | -35866 |
chr15 | 72573025 | 72573141 | E073 | -25473 |
chr15 | 72599834 | 72599967 | E073 | 1220 |
chr15 | 72563313 | 72563523 | E074 | -35091 |
chr15 | 72563584 | 72563704 | E074 | -34910 |
chr15 | 72562968 | 72563022 | E081 | -35592 |
chr15 | 72563171 | 72563211 | E081 | -35403 |
chr15 | 72563313 | 72563523 | E081 | -35091 |
chr15 | 72563584 | 72563704 | E081 | -34910 |
chr15 | 72597549 | 72597604 | E081 | -1010 |
chr15 | 72597679 | 72598155 | E081 | -459 |
chr15 | 72599834 | 72599967 | E081 | 1220 |
chr15 | 72600017 | 72600071 | E081 | 1403 |
chr15 | 72600159 | 72600223 | E081 | 1545 |
chr15 | 72600273 | 72600399 | E081 | 1659 |
chr15 | 72608044 | 72608094 | E081 | 9430 |
chr15 | 72608416 | 72608584 | E081 | 9802 |
chr15 | 72597549 | 72597604 | E082 | -1010 |
chr15 | 72597679 | 72598155 | E082 | -459 |
chr15 | 72599834 | 72599967 | E082 | 1220 |
chr15 | 72600017 | 72600071 | E082 | 1403 |
chr15 | 72600159 | 72600223 | E082 | 1545 |
chr15 | 72608044 | 72608094 | E082 | 9430 |
chr15 | 72608416 | 72608584 | E082 | 9802 |
chr15 | 72613798 | 72613848 | E082 | 15184 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr15 | 72564071 | 72566010 | E067 | -32604 |
chr15 | 72611554 | 72611604 | E067 | 12940 |
chr15 | 72611634 | 72611844 | E067 | 13020 |
chr15 | 72611866 | 72613390 | E067 | 13252 |
chr15 | 72564071 | 72566010 | E068 | -32604 |
chr15 | 72611866 | 72613390 | E068 | 13252 |
chr15 | 72564071 | 72566010 | E069 | -32604 |
chr15 | 72611634 | 72611844 | E069 | 13020 |
chr15 | 72611866 | 72613390 | E069 | 13252 |
chr15 | 72564071 | 72566010 | E070 | -32604 |
chr15 | 72611554 | 72611604 | E070 | 12940 |
chr15 | 72611634 | 72611844 | E070 | 13020 |
chr15 | 72611866 | 72613390 | E070 | 13252 |
chr15 | 72564071 | 72566010 | E071 | -32604 |
chr15 | 72611554 | 72611604 | E071 | 12940 |
chr15 | 72611634 | 72611844 | E071 | 13020 |
chr15 | 72611866 | 72613390 | E071 | 13252 |
chr15 | 72564071 | 72566010 | E072 | -32604 |
chr15 | 72611554 | 72611604 | E072 | 12940 |
chr15 | 72611634 | 72611844 | E072 | 13020 |
chr15 | 72611866 | 72613390 | E072 | 13252 |
chr15 | 72564071 | 72566010 | E073 | -32604 |
chr15 | 72611554 | 72611604 | E073 | 12940 |
chr15 | 72611634 | 72611844 | E073 | 13020 |
chr15 | 72611866 | 72613390 | E073 | 13252 |
chr15 | 72564071 | 72566010 | E074 | -32604 |
chr15 | 72611634 | 72611844 | E074 | 13020 |
chr15 | 72611866 | 72613390 | E074 | 13252 |
chr15 | 72564071 | 72566010 | E081 | -32604 |
chr15 | 72611554 | 72611604 | E081 | 12940 |
chr15 | 72611634 | 72611844 | E081 | 13020 |
chr15 | 72611866 | 72613390 | E081 | 13252 |
chr15 | 72564071 | 72566010 | E082 | -32604 |
chr15 | 72611554 | 72611604 | E082 | 12940 |
chr15 | 72611634 | 72611844 | E082 | 13020 |
chr15 | 72611866 | 72613390 | E082 | 13252 |