SNP Detail Info-rs29684

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LOC107986788 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0342 (10247/29900,GnomAD)
A=0315 (9192/29118,TOPMED)
A=0323 (1617/5008,1000G)
A=0422 (1625/3854,ALSPAC)
A=0414 (1534/3708,TWINSUK)

Position: chr7:41815054 (GRCh38.p7) (7p14.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.41815054G>A
GRCh37.p13 chr 7	NC_000007.13:g.41854652G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LOC107986788 transcript variant X1	XR_001745185.1:n.	N/A	Intron Variant
LOC107986788 transcript variant X2	XR_001745186.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.845	A=0.155
1000Genomes	American	Sub	694	G=0.660	A=0.340
1000Genomes	East Asian	Sub	1008	G=0.799	A=0.201
1000Genomes	Europe	Sub	1006	G=0.557	A=0.443
1000Genomes	Global	Study-wide	5008	G=0.677	A=0.323
1000Genomes	South Asian	Sub	978	G=0.460	A=0.540
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.578	A=0.422
The Genome Aggregation Database	African	Sub	8722	G=0.825	A=0.175
The Genome Aggregation Database	American	Sub	836	G=0.630	A=0.370
The Genome Aggregation Database	East Asian	Sub	1618	G=0.813	A=0.187
The Genome Aggregation Database	Europe	Sub	18422	G=0.567	A=0.432
The Genome Aggregation Database	Global	Study-wide	29900	G=0.657	A=0.342
The Genome Aggregation Database	Other	Sub	302	G=0.540	A=0.460
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.684	A=0.315
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.586	A=0.414

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs29684	8.74E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs29684