SNP Detail Info-rs2968625

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0323 (9682/29892,GnomAD)
G=0308 (8985/29116,TOPMED)
G=0279 (1398/5008,1000G)
G=0381 (1469/3854,ALSPAC)
G=0362 (1341/3708,TWINSUK)

Position: chr2:35938765 (GRCh38.p7) (2p22.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 8 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.35938765G>A
GRCh37.p13 chr 2	NC_000002.11:g.36163832A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.787	G==0.213
1000Genomes	American	Sub	694	A=0.740	G==0.260
1000Genomes	East Asian	Sub	1008	A=0.747	G==0.253
1000Genomes	Europe	Sub	1006	A=0.590	G==0.410
1000Genomes	Global	Study-wide	5008	A=0.721	G==0.279
1000Genomes	South Asian	Sub	978	A=0.720	G==0.280
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.619	G==0.381
The Genome Aggregation Database	African	Sub	8710	A=0.769	G==0.231
The Genome Aggregation Database	American	Sub	834	A=0.780	G==0.220
The Genome Aggregation Database	East Asian	Sub	1620	A=0.771	G==0.229
The Genome Aggregation Database	Europe	Sub	18428	A=0.620	G==0.379
The Genome Aggregation Database	Global	Study-wide	29892	A=0.676	G==0.323
The Genome Aggregation Database	Other	Sub	300	A=0.610	G==0.390
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.691	G==0.308
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.638	G==0.362

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2968625	0.000403	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	36198820	36198887	E068	34988
chr2	36198937	36199129	E068	35105
chr2	36175077	36175121	E070	11245
chr2	36175306	36175413	E070	11474
chr2	36172722	36173230	E074	8890
chr2	36188363	36188427	E082	24531
chr2	36188437	36188537	E082	24605
chr2	36188577	36188705	E082	24745

rs2968625