SNP Detail Info-rs2997415

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0064 (1933/29920,GnomAD)
G==0050 (1460/29116,TOPMED)
G==0081 (404/5008,1000G)
G==0077 (295/3854,ALSPAC)
G==0072 (268/3708,TWINSUK)

Position: chr13:61474483 (GRCh38.p7) (13q21.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.61474483G>A
GRCh37.p13 chr 13	NC_000013.10:g.62048616G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.016	A=0.984
1000Genomes	American	Sub	694	G=0.090	A=0.910
1000Genomes	East Asian	Sub	1008	G=0.218	A=0.782
1000Genomes	Europe	Sub	1006	G=0.062	A=0.938
1000Genomes	Global	Study-wide	5008	G=0.081	A=0.919
1000Genomes	South Asian	Sub	978	G=0.040	A=0.960
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.077	A=0.923
The Genome Aggregation Database	African	Sub	8730	G=0.025	A=0.975
The Genome Aggregation Database	American	Sub	836	G=0.070	A=0.930
The Genome Aggregation Database	East Asian	Sub	1580	G=0.221	A=0.779
The Genome Aggregation Database	Europe	Sub	18472	G=0.070	A=0.930
The Genome Aggregation Database	Global	Study-wide	29920	G=0.064	A=0.935
The Genome Aggregation Database	Other	Sub	302	G=0.050	A=0.950
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.050	A=0.949
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.072	A=0.928

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs2997415	0.000228	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs2997415