Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.128212497G>A |
GRCh37.p13 chr 3 | NC_000003.11:g.127931340G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
EEFSEC transcript | NM_021937.4:c. | N/A | Intron Variant |
EEFSEC transcript variant X4 | XM_005247696.2:c. | N/A | Intron Variant |
EEFSEC transcript variant X1 | XM_017006975.1:c. | N/A | Intron Variant |
EEFSEC transcript variant X2 | XM_017006976.1:c. | N/A | Intron Variant |
EEFSEC transcript variant X3 | XM_017006977.1:c. | N/A | Intron Variant |
EEFSEC transcript variant X5 | XM_017006978.1:c. | N/A | Intron Variant |
EEFSEC transcript variant X7 | XM_017006980.1:c. | N/A | Intron Variant |
EEFSEC transcript variant X7 | XM_011513066.2:c. | N/A | Genic Upstream Transcript Variant |
EEFSEC transcript variant X6 | XM_017006979.1:c. | N/A | Genic Upstream Transcript Variant |
EEFSEC transcript variant X9 | XM_017006981.1:c. | N/A | Genic Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.123 | A=0.877 |
1000Genomes | American | Sub | 694 | G=0.120 | A=0.880 |
1000Genomes | East Asian | Sub | 1008 | G=0.007 | A=0.993 |
1000Genomes | Europe | Sub | 1006 | G=0.111 | A=0.889 |
1000Genomes | Global | Study-wide | 5008 | G=0.104 | A=0.896 |
1000Genomes | South Asian | Sub | 978 | G=0.170 | A=0.830 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.117 | A=0.883 |
The Genome Aggregation Database | African | Sub | 8714 | G=0.112 | A=0.888 |
The Genome Aggregation Database | American | Sub | 838 | G=0.120 | A=0.880 |
The Genome Aggregation Database | East Asian | Sub | 1622 | G=0.002 | A=0.998 |
The Genome Aggregation Database | Europe | Sub | 18464 | G=0.122 | A=0.877 |
The Genome Aggregation Database | Global | Study-wide | 29940 | G=0.113 | A=0.886 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.120 | A=0.880 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.109 | A=0.890 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.120 | A=0.880 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs2999090 | 0.000388 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 127886829 | 127886916 | E067 | -44424 |
chr3 | 127886968 | 127887315 | E067 | -44025 |
chr3 | 127898056 | 127898269 | E067 | -33071 |
chr3 | 127898473 | 127898534 | E067 | -32806 |
chr3 | 127913326 | 127913421 | E067 | -17919 |
chr3 | 127913805 | 127913926 | E067 | -17414 |
chr3 | 127914124 | 127914216 | E067 | -17124 |
chr3 | 127914318 | 127914519 | E067 | -16821 |
chr3 | 127914631 | 127914762 | E067 | -16578 |
chr3 | 127914766 | 127914925 | E067 | -16415 |
chr3 | 127917339 | 127917525 | E067 | -13815 |
chr3 | 127945773 | 127946177 | E067 | 14433 |
chr3 | 127955523 | 127955688 | E067 | 24183 |
chr3 | 127955771 | 127955899 | E067 | 24431 |
chr3 | 127956415 | 127957340 | E067 | 25075 |
chr3 | 127886829 | 127886916 | E068 | -44424 |
chr3 | 127886968 | 127887315 | E068 | -44025 |
chr3 | 127892776 | 127893021 | E068 | -38319 |
chr3 | 127893449 | 127893504 | E068 | -37836 |
chr3 | 127893692 | 127893743 | E068 | -37597 |
chr3 | 127893860 | 127894011 | E068 | -37329 |
chr3 | 127894118 | 127894166 | E068 | -37174 |
chr3 | 127894174 | 127894224 | E068 | -37116 |
chr3 | 127894251 | 127894383 | E068 | -36957 |
chr3 | 127899196 | 127899348 | E068 | -31992 |
chr3 | 127899399 | 127899513 | E068 | -31827 |
chr3 | 127900145 | 127900262 | E068 | -31078 |
chr3 | 127900280 | 127900349 | E068 | -30991 |
chr3 | 127913326 | 127913421 | E068 | -17919 |
chr3 | 127913805 | 127913926 | E068 | -17414 |
chr3 | 127914124 | 127914216 | E068 | -17124 |
chr3 | 127914318 | 127914519 | E068 | -16821 |
chr3 | 127914631 | 127914762 | E068 | -16578 |
chr3 | 127914766 | 127914925 | E068 | -16415 |
chr3 | 127917339 | 127917525 | E068 | -13815 |
chr3 | 127948342 | 127948528 | E068 | 17002 |
chr3 | 127948571 | 127948632 | E068 | 17231 |
chr3 | 127955182 | 127955250 | E068 | 23842 |
chr3 | 127955523 | 127955688 | E068 | 24183 |
chr3 | 127955771 | 127955899 | E068 | 24431 |
chr3 | 127956415 | 127957340 | E068 | 25075 |
chr3 | 127900145 | 127900262 | E069 | -31078 |
chr3 | 127900280 | 127900349 | E069 | -30991 |
chr3 | 127913805 | 127913926 | E069 | -17414 |
chr3 | 127914124 | 127914216 | E069 | -17124 |
chr3 | 127914318 | 127914519 | E069 | -16821 |
chr3 | 127914631 | 127914762 | E069 | -16578 |
chr3 | 127914766 | 127914925 | E069 | -16415 |
chr3 | 127917339 | 127917525 | E069 | -13815 |
chr3 | 127929385 | 127929835 | E069 | -1505 |
chr3 | 127945567 | 127945763 | E069 | 14227 |
chr3 | 127945773 | 127946177 | E069 | 14433 |
chr3 | 127948041 | 127948181 | E069 | 16701 |
chr3 | 127948342 | 127948528 | E069 | 17002 |
chr3 | 127950233 | 127950297 | E069 | 18893 |
chr3 | 127955523 | 127955688 | E069 | 24183 |
chr3 | 127955771 | 127955899 | E069 | 24431 |
chr3 | 127956415 | 127957340 | E069 | 25075 |
chr3 | 127957538 | 127957712 | E069 | 26198 |
chr3 | 127958234 | 127958416 | E069 | 26894 |
chr3 | 127913805 | 127913926 | E070 | -17414 |
chr3 | 127914124 | 127914216 | E070 | -17124 |
chr3 | 127914318 | 127914519 | E070 | -16821 |
chr3 | 127914631 | 127914762 | E070 | -16578 |
chr3 | 127914766 | 127914925 | E070 | -16415 |
chr3 | 127945567 | 127945763 | E070 | 14227 |
chr3 | 127945773 | 127946177 | E070 | 14433 |
chr3 | 127946756 | 127946819 | E070 | 15416 |
chr3 | 127948041 | 127948181 | E070 | 16701 |
chr3 | 127955523 | 127955688 | E070 | 24183 |
chr3 | 127955771 | 127955899 | E070 | 24431 |
chr3 | 127956415 | 127957340 | E070 | 25075 |
chr3 | 127957538 | 127957712 | E070 | 26198 |
chr3 | 127886829 | 127886916 | E071 | -44424 |
chr3 | 127886968 | 127887315 | E071 | -44025 |
chr3 | 127892776 | 127893021 | E071 | -38319 |
chr3 | 127893449 | 127893504 | E071 | -37836 |
chr3 | 127893692 | 127893743 | E071 | -37597 |
chr3 | 127893860 | 127894011 | E071 | -37329 |
chr3 | 127894118 | 127894166 | E071 | -37174 |
chr3 | 127894174 | 127894224 | E071 | -37116 |
chr3 | 127899399 | 127899513 | E071 | -31827 |
chr3 | 127900145 | 127900262 | E071 | -31078 |
chr3 | 127900280 | 127900349 | E071 | -30991 |
chr3 | 127913326 | 127913421 | E071 | -17919 |
chr3 | 127913805 | 127913926 | E071 | -17414 |
chr3 | 127914124 | 127914216 | E071 | -17124 |
chr3 | 127914318 | 127914519 | E071 | -16821 |
chr3 | 127914631 | 127914762 | E071 | -16578 |
chr3 | 127914766 | 127914925 | E071 | -16415 |
chr3 | 127915557 | 127915774 | E071 | -15566 |
chr3 | 127917339 | 127917525 | E071 | -13815 |
chr3 | 127929385 | 127929835 | E071 | -1505 |
chr3 | 127945773 | 127946177 | E071 | 14433 |
chr3 | 127947779 | 127947851 | E071 | 16439 |
chr3 | 127947855 | 127947935 | E071 | 16515 |
chr3 | 127948041 | 127948181 | E071 | 16701 |
chr3 | 127948342 | 127948528 | E071 | 17002 |
chr3 | 127948571 | 127948632 | E071 | 17231 |
chr3 | 127950405 | 127950455 | E071 | 19065 |
chr3 | 127951701 | 127951751 | E071 | 20361 |
chr3 | 127955523 | 127955688 | E071 | 24183 |
chr3 | 127955771 | 127955899 | E071 | 24431 |
chr3 | 127956415 | 127957340 | E071 | 25075 |
chr3 | 127957538 | 127957712 | E071 | 26198 |
chr3 | 127974221 | 127974282 | E071 | 42881 |
chr3 | 127900145 | 127900262 | E072 | -31078 |
chr3 | 127900280 | 127900349 | E072 | -30991 |
chr3 | 127913326 | 127913421 | E072 | -17919 |
chr3 | 127913805 | 127913926 | E072 | -17414 |
chr3 | 127914124 | 127914216 | E072 | -17124 |
chr3 | 127914318 | 127914519 | E072 | -16821 |
chr3 | 127914631 | 127914762 | E072 | -16578 |
chr3 | 127914766 | 127914925 | E072 | -16415 |
chr3 | 127917339 | 127917525 | E072 | -13815 |
chr3 | 127929385 | 127929835 | E072 | -1505 |
chr3 | 127945023 | 127945461 | E072 | 13683 |
chr3 | 127945567 | 127945763 | E072 | 14227 |
chr3 | 127945773 | 127946177 | E072 | 14433 |
chr3 | 127955523 | 127955688 | E072 | 24183 |
chr3 | 127955771 | 127955899 | E072 | 24431 |
chr3 | 127956415 | 127957340 | E072 | 25075 |
chr3 | 127957538 | 127957712 | E072 | 26198 |
chr3 | 127914124 | 127914216 | E073 | -17124 |
chr3 | 127914318 | 127914519 | E073 | -16821 |
chr3 | 127914631 | 127914762 | E073 | -16578 |
chr3 | 127914766 | 127914925 | E073 | -16415 |
chr3 | 127915557 | 127915774 | E073 | -15566 |
chr3 | 127948041 | 127948181 | E073 | 16701 |
chr3 | 127948342 | 127948528 | E073 | 17002 |
chr3 | 127956415 | 127957340 | E073 | 25075 |
chr3 | 127974221 | 127974282 | E073 | 42881 |
chr3 | 127974393 | 127974573 | E073 | 43053 |
chr3 | 127886829 | 127886916 | E074 | -44424 |
chr3 | 127886968 | 127887315 | E074 | -44025 |
chr3 | 127893449 | 127893504 | E074 | -37836 |
chr3 | 127893692 | 127893743 | E074 | -37597 |
chr3 | 127893860 | 127894011 | E074 | -37329 |
chr3 | 127894118 | 127894166 | E074 | -37174 |
chr3 | 127894174 | 127894224 | E074 | -37116 |
chr3 | 127894251 | 127894383 | E074 | -36957 |
chr3 | 127898056 | 127898269 | E074 | -33071 |
chr3 | 127898473 | 127898534 | E074 | -32806 |
chr3 | 127899196 | 127899348 | E074 | -31992 |
chr3 | 127899399 | 127899513 | E074 | -31827 |
chr3 | 127900145 | 127900262 | E074 | -31078 |
chr3 | 127900280 | 127900349 | E074 | -30991 |
chr3 | 127912154 | 127912302 | E074 | -19038 |
chr3 | 127913326 | 127913421 | E074 | -17919 |
chr3 | 127913805 | 127913926 | E074 | -17414 |
chr3 | 127914124 | 127914216 | E074 | -17124 |
chr3 | 127914318 | 127914519 | E074 | -16821 |
chr3 | 127914631 | 127914762 | E074 | -16578 |
chr3 | 127914766 | 127914925 | E074 | -16415 |
chr3 | 127915557 | 127915774 | E074 | -15566 |
chr3 | 127929385 | 127929835 | E074 | -1505 |
chr3 | 127945773 | 127946177 | E074 | 14433 |
chr3 | 127946756 | 127946819 | E074 | 15416 |
chr3 | 127947779 | 127947851 | E074 | 16439 |
chr3 | 127947855 | 127947935 | E074 | 16515 |
chr3 | 127948041 | 127948181 | E074 | 16701 |
chr3 | 127948342 | 127948528 | E074 | 17002 |
chr3 | 127948571 | 127948632 | E074 | 17231 |
chr3 | 127951701 | 127951751 | E074 | 20361 |
chr3 | 127955523 | 127955688 | E074 | 24183 |
chr3 | 127955771 | 127955899 | E074 | 24431 |
chr3 | 127956415 | 127957340 | E074 | 25075 |
chr3 | 127957538 | 127957712 | E074 | 26198 |
chr3 | 127945023 | 127945461 | E081 | 13683 |
chr3 | 127945567 | 127945763 | E081 | 14227 |
chr3 | 127945773 | 127946177 | E081 | 14433 |
chr3 | 127947779 | 127947851 | E081 | 16439 |
chr3 | 127947855 | 127947935 | E081 | 16515 |
chr3 | 127948041 | 127948181 | E081 | 16701 |
chr3 | 127948342 | 127948528 | E081 | 17002 |
chr3 | 127955182 | 127955250 | E081 | 23842 |
chr3 | 127955523 | 127955688 | E081 | 24183 |
chr3 | 127955771 | 127955899 | E081 | 24431 |
chr3 | 127956415 | 127957340 | E081 | 25075 |
chr3 | 127955182 | 127955250 | E082 | 23842 |
chr3 | 127955523 | 127955688 | E082 | 24183 |
chr3 | 127955771 | 127955899 | E082 | 24431 |
chr3 | 127956415 | 127957340 | E082 | 25075 |