SNP Detail Info-rs3006120

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0206 (4283/20710,GnomAD)
A=0218 (822/3775,1000G)
A=0182 (674/3708,TWINSUK)
A=0183 (530/2889,ALSPAC)

Position: chrX:34119210 (GRCh38.p7) (Xp21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.34119210G>A
GRCh37.p13 chr X	NC_000023.10:g.34137327G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.754	A=0.246
1000Genomes	American	Sub	524	G=0.810	A=0.190
1000Genomes	East Asian	Sub	764	G=0.710	A=0.290
1000Genomes	Europe	Sub	766	G=0.840	A=0.160
1000Genomes	Global	Study-wide	3775	G=0.782	A=0.218
1000Genomes	South Asian	Sub	718	G=0.810	A=0.190
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.817	A=0.183
The Genome Aggregation Database	African	Sub	5829	G=0.718	A=0.282
The Genome Aggregation Database	American	Sub	609	G=0.880	A=0.120
The Genome Aggregation Database	East Asian	Sub	1009	G=0.721	A=0.279
The Genome Aggregation Database	Europe	Sub	13075	G=0.826	A=0.174
The Genome Aggregation Database	Global	Study-wide	20710	G=0.793	A=0.206
The Genome Aggregation Database	Other	Sub	188	G=0.940	A=0.060
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.818	A=0.182

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs3006120	0.000625	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs3006120