rs3013029

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0361 (7332/20313,GnomAD)
G=0202 (763/3775,1000G)
G=0484 (1794/3708,TWINSUK)
G=0471 (1362/2889,ALSPAC)
chrX:123008072 (GRCh38.p7) (Xq25)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.123008072A>G
GRCh37.p13 chr XNC_000023.10:g.122141925A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003A=0.878G=0.122
1000GenomesAmericanSub524A=0.760G=0.240
1000GenomesEast AsianSub764A=0.950G=0.050
1000GenomesEuropeSub766A=0.490G=0.510
1000GenomesGlobalStudy-wide3775A=0.798G=0.202
1000GenomesSouth AsianSub718A=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889A=0.529G=0.471
The Genome Aggregation DatabaseAfricanSub5741A=0.842G=0.158
The Genome Aggregation DatabaseAmericanSub601A=0.800G=0.200
The Genome Aggregation DatabaseEast AsianSub1009A=0.975G=0.025
The Genome Aggregation DatabaseEuropeSub12779A=0.515G=0.484
The Genome Aggregation DatabaseGlobalStudy-wide20313A=0.639G=0.361
The Genome Aggregation DatabaseOtherSub183A=0.490G=0.510
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.516G=0.484
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs30130290.000741alcohol dependence20201924

eQTL of rs3013029 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3013029 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chrX122163621122163729E07121696
chrX122163743122163806E07121818