rs302964

Homo sapiens
C>T
ZFPM2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0423 (12661/29900,GnomAD)
C==0355 (10351/29118,TOPMED)
C==0314 (1573/5008,1000G)
T=0489 (1884/3854,ALSPAC)
T=0480 (1778/3708,TWINSUK)
chr8:105506184 (GRCh38.p7) (8q23.1)
ND
GWASdb2
1   publication(s)
See rs on genome
17 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.105506184C>T
GRCh37.p13 chr 8NC_000008.10:g.106518412C>T
ZFPM2 RefSeqGeneNG_011723.1:g.192266C>T

Gene: ZFPM2, zinc finger protein, FOG family member 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZFPM2 transcript variant 1NM_012082.3:c.N/AIntron Variant
ZFPM2 transcript variant X1XM_011516947.2:c.N/AIntron Variant
ZFPM2 transcript variant X2XM_011516948.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.141T=0.859
1000GenomesAmericanSub694C=0.320T=0.680
1000GenomesEast AsianSub1008C=0.304T=0.696
1000GenomesEuropeSub1006C=0.482T=0.518
1000GenomesGlobalStudy-wide5008C=0.314T=0.686
1000GenomesSouth AsianSub978C=0.380T=0.620
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.511T=0.489
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.355T=0.644
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.520T=0.480
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs3029640.00046nicotine smoking19268276

eQTL of rs302964 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs302964 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr8106529982106530970E06711570
chr8106487234106487308E068-31104
chr8106529982106530970E06811570
chr8106529982106530970E06911570
chr8106503427106503474E070-14938
chr8106529982106530970E07111570
chr8106536614106536716E07118202
chr8106537448106537544E07119036
chr8106537565106537661E07119153
chr8106529982106530970E07211570
chr8106537448106537544E07319036
chr8106487234106487308E081-31104
chr8106488439106488500E081-29912
chr8106488652106488860E081-29552
chr8106536614106536716E08118202
chr8106536736106537283E08118324
chr8106485964106486085E082-32327