Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 8 | NC_000008.11:g.141141614C>T |
GRCh37.p13 chr 8 | NC_000008.10:g.142151713C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
DENND3 transcript | NM_014957.2:c. | N/A | Intron Variant |
DENND3 transcript variant X1 | XM_005250838.4:c. | N/A | Intron Variant |
DENND3 transcript variant X3 | XM_005250839.2:c. | N/A | Intron Variant |
DENND3 transcript variant X4 | XM_005250840.4:c. | N/A | Intron Variant |
DENND3 transcript variant X6 | XM_005250841.3:c. | N/A | Intron Variant |
DENND3 transcript variant X6 | XM_005250842.4:c. | N/A | Intron Variant |
DENND3 transcript variant X2 | XM_011516933.1:c. | N/A | Intron Variant |
DENND3 transcript variant X8 | XM_011516934.2:c. | N/A | Intron Variant |
DENND3 transcript variant X12 | XM_011516937.1:c. | N/A | Intron Variant |
DENND3 transcript variant X17 | XM_011516941.2:c. | N/A | Intron Variant |
DENND3 transcript variant X4 | XM_017013241.1:c. | N/A | Intron Variant |
DENND3 transcript variant X10 | XM_017013242.1:c. | N/A | Intron Variant |
DENND3 transcript variant X14 | XM_011516938.2:c. | N/A | Genic Upstream Transcript Variant |
DENND3 transcript variant X16 | XM_011516939.2:c. | N/A | Genic Upstream Transcript Variant |
DENND3 transcript variant X14 | XM_011516940.2:c. | N/A | Genic Upstream Transcript Variant |
DENND3 transcript variant X17 | XM_017013243.1:c. | N/A | Genic Upstream Transcript Variant |
DENND3 transcript variant X10 | XR_001745497.1:n. | N/A | Intron Variant |
DENND3 transcript variant X13 | XR_001745498.1:n. | N/A | Intron Variant |
DENND3 transcript variant X20 | XR_001745499.1:n. | N/A | Intron Variant |
DENND3 transcript variant X9 | XR_928310.2:n. | N/A | Intron Variant |
DENND3 transcript variant X19 | XR_928312.2:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.072 | T=0.928 |
1000Genomes | American | Sub | 694 | C=0.140 | T=0.860 |
1000Genomes | East Asian | Sub | 1008 | C=0.012 | T=0.988 |
1000Genomes | Europe | Sub | 1006 | C=0.246 | T=0.754 |
1000Genomes | Global | Study-wide | 5008 | C=0.107 | T=0.893 |
1000Genomes | South Asian | Sub | 978 | C=0.080 | T=0.920 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.256 | T=0.744 |
The Genome Aggregation Database | African | Sub | 8704 | C=0.096 | T=0.904 |
The Genome Aggregation Database | American | Sub | 838 | C=0.150 | T=0.850 |
The Genome Aggregation Database | East Asian | Sub | 1622 | C=0.014 | T=0.986 |
The Genome Aggregation Database | Europe | Sub | 18448 | C=0.243 | T=0.756 |
The Genome Aggregation Database | Global | Study-wide | 29912 | C=0.186 | T=0.813 |
The Genome Aggregation Database | Other | Sub | 300 | C=0.310 | T=0.690 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.170 | T=0.829 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.257 | T=0.743 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs307766 | 0.00066 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr8 | 142125513 | 142125582 | E067 | -26131 |
chr8 | 142125591 | 142126707 | E067 | -25006 |
chr8 | 142126716 | 142126766 | E067 | -24947 |
chr8 | 142126817 | 142127021 | E067 | -24692 |
chr8 | 142127034 | 142127956 | E067 | -23757 |
chr8 | 142136190 | 142136365 | E067 | -15348 |
chr8 | 142136520 | 142136672 | E067 | -15041 |
chr8 | 142136733 | 142137024 | E067 | -14689 |
chr8 | 142101888 | 142102024 | E068 | -49689 |
chr8 | 142102106 | 142102184 | E068 | -49529 |
chr8 | 142105425 | 142105955 | E068 | -45758 |
chr8 | 142105984 | 142106367 | E068 | -45346 |
chr8 | 142125164 | 142125424 | E068 | -26289 |
chr8 | 142125513 | 142125582 | E068 | -26131 |
chr8 | 142125591 | 142126707 | E068 | -25006 |
chr8 | 142126716 | 142126766 | E068 | -24947 |
chr8 | 142126817 | 142127021 | E068 | -24692 |
chr8 | 142127034 | 142127956 | E068 | -23757 |
chr8 | 142128752 | 142128877 | E068 | -22836 |
chr8 | 142128980 | 142129199 | E068 | -22514 |
chr8 | 142129236 | 142130112 | E068 | -21601 |
chr8 | 142130719 | 142130837 | E068 | -20876 |
chr8 | 142130892 | 142130960 | E068 | -20753 |
chr8 | 142131132 | 142131438 | E068 | -20275 |
chr8 | 142142840 | 142142894 | E068 | -8819 |
chr8 | 142162131 | 142163167 | E068 | 10418 |
chr8 | 142167146 | 142167836 | E068 | 15433 |
chr8 | 142174122 | 142174208 | E068 | 22409 |
chr8 | 142174291 | 142174458 | E068 | 22578 |
chr8 | 142181866 | 142182001 | E068 | 30153 |
chr8 | 142182206 | 142182297 | E068 | 30493 |
chr8 | 142182435 | 142182911 | E068 | 30722 |
chr8 | 142183087 | 142183154 | E068 | 31374 |
chr8 | 142183192 | 142183970 | E068 | 31479 |
chr8 | 142105984 | 142106367 | E069 | -45346 |
chr8 | 142106393 | 142106938 | E069 | -44775 |
chr8 | 142125164 | 142125424 | E069 | -26289 |
chr8 | 142125513 | 142125582 | E069 | -26131 |
chr8 | 142125591 | 142126707 | E069 | -25006 |
chr8 | 142126716 | 142126766 | E069 | -24947 |
chr8 | 142126817 | 142127021 | E069 | -24692 |
chr8 | 142127034 | 142127956 | E069 | -23757 |
chr8 | 142128017 | 142128461 | E069 | -23252 |
chr8 | 142136520 | 142136672 | E069 | -15041 |
chr8 | 142136733 | 142137024 | E069 | -14689 |
chr8 | 142143377 | 142143513 | E069 | -8200 |
chr8 | 142143542 | 142143594 | E069 | -8119 |
chr8 | 142143957 | 142144197 | E069 | -7516 |
chr8 | 142174122 | 142174208 | E069 | 22409 |
chr8 | 142174291 | 142174458 | E069 | 22578 |
chr8 | 142174525 | 142175186 | E069 | 22812 |
chr8 | 142175243 | 142175552 | E069 | 23530 |
chr8 | 142181866 | 142182001 | E069 | 30153 |
chr8 | 142182206 | 142182297 | E069 | 30493 |
chr8 | 142183192 | 142183970 | E069 | 31479 |
chr8 | 142184037 | 142184253 | E069 | 32324 |
chr8 | 142194225 | 142194355 | E069 | 42512 |
chr8 | 142194692 | 142195029 | E069 | 42979 |
chr8 | 142195128 | 142195178 | E069 | 43415 |
chr8 | 142195184 | 142195339 | E069 | 43471 |
chr8 | 142122805 | 142123210 | E070 | -28503 |
chr8 | 142123309 | 142123377 | E070 | -28336 |
chr8 | 142123378 | 142123592 | E070 | -28121 |
chr8 | 142123771 | 142123825 | E070 | -27888 |
chr8 | 142123868 | 142123918 | E070 | -27795 |
chr8 | 142123940 | 142124145 | E070 | -27568 |
chr8 | 142125164 | 142125424 | E070 | -26289 |
chr8 | 142125513 | 142125582 | E070 | -26131 |
chr8 | 142125591 | 142126707 | E070 | -25006 |
chr8 | 142126716 | 142126766 | E070 | -24947 |
chr8 | 142126817 | 142127021 | E070 | -24692 |
chr8 | 142127034 | 142127956 | E070 | -23757 |
chr8 | 142174122 | 142174208 | E070 | 22409 |
chr8 | 142174291 | 142174458 | E070 | 22578 |
chr8 | 142174525 | 142175186 | E070 | 22812 |
chr8 | 142194225 | 142194355 | E070 | 42512 |
chr8 | 142194432 | 142194563 | E070 | 42719 |
chr8 | 142194692 | 142195029 | E070 | 42979 |
chr8 | 142195128 | 142195178 | E070 | 43415 |
chr8 | 142195184 | 142195339 | E070 | 43471 |
chr8 | 142195363 | 142195406 | E070 | 43650 |
chr8 | 142200406 | 142200607 | E070 | 48693 |
chr8 | 142200652 | 142200859 | E070 | 48939 |
chr8 | 142200916 | 142201184 | E070 | 49203 |
chr8 | 142105984 | 142106367 | E071 | -45346 |
chr8 | 142106393 | 142106938 | E071 | -44775 |
chr8 | 142125164 | 142125424 | E071 | -26289 |
chr8 | 142125513 | 142125582 | E071 | -26131 |
chr8 | 142125591 | 142126707 | E071 | -25006 |
chr8 | 142126716 | 142126766 | E071 | -24947 |
chr8 | 142126817 | 142127021 | E071 | -24692 |
chr8 | 142127034 | 142127956 | E071 | -23757 |
chr8 | 142128017 | 142128461 | E071 | -23252 |
chr8 | 142128752 | 142128877 | E071 | -22836 |
chr8 | 142128980 | 142129199 | E071 | -22514 |
chr8 | 142130719 | 142130837 | E071 | -20876 |
chr8 | 142130892 | 142130960 | E071 | -20753 |
chr8 | 142136733 | 142137024 | E071 | -14689 |
chr8 | 142141870 | 142142260 | E071 | -9453 |
chr8 | 142143377 | 142143513 | E071 | -8200 |
chr8 | 142143542 | 142143594 | E071 | -8119 |
chr8 | 142174122 | 142174208 | E071 | 22409 |
chr8 | 142175243 | 142175552 | E071 | 23530 |
chr8 | 142181866 | 142182001 | E071 | 30153 |
chr8 | 142125513 | 142125582 | E072 | -26131 |
chr8 | 142125591 | 142126707 | E072 | -25006 |
chr8 | 142126716 | 142126766 | E072 | -24947 |
chr8 | 142126817 | 142127021 | E072 | -24692 |
chr8 | 142127034 | 142127956 | E072 | -23757 |
chr8 | 142130892 | 142130960 | E072 | -20753 |
chr8 | 142131132 | 142131438 | E072 | -20275 |
chr8 | 142136733 | 142137024 | E072 | -14689 |
chr8 | 142168133 | 142168854 | E072 | 16420 |
chr8 | 142174122 | 142174208 | E072 | 22409 |
chr8 | 142174291 | 142174458 | E072 | 22578 |
chr8 | 142179230 | 142179649 | E072 | 27517 |
chr8 | 142179654 | 142180569 | E072 | 27941 |
chr8 | 142183192 | 142183970 | E072 | 31479 |
chr8 | 142105425 | 142105955 | E073 | -45758 |
chr8 | 142105984 | 142106367 | E073 | -45346 |
chr8 | 142106393 | 142106938 | E073 | -44775 |
chr8 | 142125164 | 142125424 | E073 | -26289 |
chr8 | 142125513 | 142125582 | E073 | -26131 |
chr8 | 142125591 | 142126707 | E073 | -25006 |
chr8 | 142126716 | 142126766 | E073 | -24947 |
chr8 | 142126817 | 142127021 | E073 | -24692 |
chr8 | 142127034 | 142127956 | E073 | -23757 |
chr8 | 142128017 | 142128461 | E073 | -23252 |
chr8 | 142128980 | 142129199 | E073 | -22514 |
chr8 | 142136520 | 142136672 | E073 | -15041 |
chr8 | 142136733 | 142137024 | E073 | -14689 |
chr8 | 142143957 | 142144197 | E073 | -7516 |
chr8 | 142154479 | 142154533 | E073 | 2766 |
chr8 | 142154877 | 142154960 | E073 | 3164 |
chr8 | 142155104 | 142155176 | E073 | 3391 |
chr8 | 142161981 | 142162095 | E073 | 10268 |
chr8 | 142162131 | 142163167 | E073 | 10418 |
chr8 | 142165009 | 142165108 | E073 | 13296 |
chr8 | 142174122 | 142174208 | E073 | 22409 |
chr8 | 142174291 | 142174458 | E073 | 22578 |
chr8 | 142175243 | 142175552 | E073 | 23530 |
chr8 | 142179230 | 142179649 | E073 | 27517 |
chr8 | 142181409 | 142181798 | E073 | 29696 |
chr8 | 142181866 | 142182001 | E073 | 30153 |
chr8 | 142182206 | 142182297 | E073 | 30493 |
chr8 | 142182435 | 142182911 | E073 | 30722 |
chr8 | 142183087 | 142183154 | E073 | 31374 |
chr8 | 142183192 | 142183970 | E073 | 31479 |
chr8 | 142105984 | 142106367 | E074 | -45346 |
chr8 | 142106393 | 142106938 | E074 | -44775 |
chr8 | 142125164 | 142125424 | E074 | -26289 |
chr8 | 142125513 | 142125582 | E074 | -26131 |
chr8 | 142125591 | 142126707 | E074 | -25006 |
chr8 | 142126716 | 142126766 | E074 | -24947 |
chr8 | 142126817 | 142127021 | E074 | -24692 |
chr8 | 142127034 | 142127956 | E074 | -23757 |
chr8 | 142128980 | 142129199 | E074 | -22514 |
chr8 | 142136520 | 142136672 | E074 | -15041 |
chr8 | 142136733 | 142137024 | E074 | -14689 |
chr8 | 142174291 | 142174458 | E074 | 22578 |
chr8 | 142175243 | 142175552 | E074 | 23530 |
chr8 | 142125164 | 142125424 | E081 | -26289 |
chr8 | 142125513 | 142125582 | E081 | -26131 |
chr8 | 142125591 | 142126707 | E081 | -25006 |
chr8 | 142126716 | 142126766 | E081 | -24947 |
chr8 | 142126817 | 142127021 | E081 | -24692 |
chr8 | 142127034 | 142127956 | E081 | -23757 |
chr8 | 142170816 | 142172239 | E081 | 19103 |
chr8 | 142200406 | 142200607 | E081 | 48693 |
chr8 | 142200652 | 142200859 | E081 | 48939 |
chr8 | 142200916 | 142201184 | E081 | 49203 |
chr8 | 142201603 | 142201643 | E081 | 49890 |
chr8 | 142122805 | 142123210 | E082 | -28503 |
chr8 | 142123309 | 142123377 | E082 | -28336 |
chr8 | 142123378 | 142123592 | E082 | -28121 |
chr8 | 142126716 | 142126766 | E082 | -24947 |
chr8 | 142126817 | 142127021 | E082 | -24692 |
chr8 | 142127034 | 142127956 | E082 | -23757 |
chr8 | 142136733 | 142137024 | E082 | -14689 |
chr8 | 142194692 | 142195029 | E082 | 42979 |
chr8 | 142195128 | 142195178 | E082 | 43415 |
chr8 | 142199878 | 142200079 | E082 | 48165 |
chr8 | 142200156 | 142200236 | E082 | 48443 |
chr8 | 142200406 | 142200607 | E082 | 48693 |
chr8 | 142200652 | 142200859 | E082 | 48939 |
chr8 | 142200916 | 142201184 | E082 | 49203 |
chr8 | 142201222 | 142201286 | E082 | 49509 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr8 | 142137314 | 142140678 | E067 | -11035 |
chr8 | 142137314 | 142140678 | E068 | -11035 |
chr8 | 142137314 | 142140678 | E069 | -11035 |
chr8 | 142137314 | 142140678 | E070 | -11035 |
chr8 | 142137314 | 142140678 | E071 | -11035 |
chr8 | 142137314 | 142140678 | E072 | -11035 |
chr8 | 142137314 | 142140678 | E073 | -11035 |
chr8 | 142137314 | 142140678 | E074 | -11035 |
chr8 | 142137314 | 142140678 | E082 | -11035 |