rs3092084

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0177 (5322/29954,GnomAD)
T=0183 (5345/29118,TOPMED)
T=0277 (1389/5008,1000G)
T=0115 (445/3854,ALSPAC)
T=0118 (436/3708,TWINSUK)
chr20:46833227 (GRCh38.p7) (20q13.12)
ND
GWASdb2
1   publication(s)
See rs on genome
22 Enhancers around
11 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.46833227C>T
GRCh37.p13 chr 20NC_000020.10:g.45461866C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.775T=0.225
1000GenomesAmericanSub694C=0.740T=0.260
1000GenomesEast AsianSub1008C=0.444T=0.556
1000GenomesEuropeSub1006C=0.880T=0.120
1000GenomesGlobalStudy-wide5008C=0.723T=0.277
1000GenomesSouth AsianSub978C=0.770T=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.885T=0.115
The Genome Aggregation DatabaseAfricanSub8716C=0.790T=0.210
The Genome Aggregation DatabaseAmericanSub838C=0.700T=0.300
The Genome Aggregation DatabaseEast AsianSub1610C=0.402T=0.598
The Genome Aggregation DatabaseEuropeSub18488C=0.878T=0.121
The Genome Aggregation DatabaseGlobalStudy-wide29954C=0.822T=0.177
The Genome Aggregation DatabaseOtherSub302C=0.900T=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.816T=0.183
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.882T=0.118
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs30920840.000952nicotine dependence17158188

eQTL of rs3092084 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3092084 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr204541675945416809E070-45057
chr204541697645417079E070-44787
chr204541719845417259E070-44607
chr204541731545417371E070-44495
chr204542880345428910E070-32956
chr204543141645431686E070-30180
chr204543180745431867E070-29999
chr204543192245432118E070-29748
chr204543216845432359E070-29507
chr204543828145438419E070-23447
chr204543852245438778E070-23088
chr204543905045439151E070-22715
chr204543915445439777E070-22089
chr204544315245443931E070-17935
chr204541697645417079E081-44787
chr204541719845417259E081-44607
chr204541731545417371E081-44495
chr204543141645431686E081-30180
chr204543141645431686E082-30180
chr204543180745431867E082-29999
chr204543192245432118E082-29748
chr204544396645444212E082-17654



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr204550104745501540E06739181
chr204550104745501540E06839181
chr204550104745501540E06939181
chr204543999745440269E070-21597
chr204544037845440556E070-21310
chr204544037845440556E071-21310
chr204550104745501540E07139181
chr204550104745501540E07239181
chr204550104745501540E07439181
chr204543999745440269E082-21597
chr204544037845440556E082-21310