rs3103177

Homo sapiens
A>G
GLMN : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A==0136 (4074/29962,GnomAD)
A==0116 (3402/29118,TOPMED)
A==0068 (342/5008,1000G)
A==0198 (765/3854,ALSPAC)
A==0195 (722/3708,TWINSUK)
chr1:92290950 (GRCh38.p7) (1p22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
8 Enhancers around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.92290950A>G
GRCh37.p13 chr 1NC_000001.10:g.92756507A>G
GLMN RefSeqGeneNG_009796.1:g.13060T>C

Gene: GLMN, glomulin, FKBP associated protein(minus strand)

Molecule type Change Amino acid[Codon] SO Term
GLMN transcript variant 2NM_001319683.1:c.N/AIntron Variant
GLMN transcript variant 1NM_053274.2:c.N/AIntron Variant
GLMN transcript variant 3NR_135089.1:n.N/AIntron Variant
GLMN transcript variant X7XM_005270401.3:c.N/AIntron Variant
GLMN transcript variant X9XM_006710309.2:c.N/AIntron Variant
GLMN transcript variant X3XM_011540546.2:c.N/AIntron Variant
GLMN transcript variant X1XM_017000137.1:c.N/AIntron Variant
GLMN transcript variant X2XM_017000138.1:c.N/AIntron Variant
GLMN transcript variant X4XM_017000139.1:c.N/AIntron Variant
GLMN transcript variant X5XM_017000140.1:c.N/AIntron Variant
GLMN transcript variant X6XM_017000141.1:c.N/AIntron Variant
GLMN transcript variant X10XM_017000142.1:c.N/AIntron Variant
GLMN transcript variant X11XM_017000143.1:c.N/AIntron Variant
GLMN transcript variant X13XM_017000144.1:c.N/AIntron Variant
GLMN transcript variant X8XR_001736941.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.023G=0.977
1000GenomesAmericanSub694A=0.110G=0.890
1000GenomesEast AsianSub1008A=0.002G=0.998
1000GenomesEuropeSub1006A=0.194G=0.806
1000GenomesGlobalStudy-wide5008A=0.068G=0.932
1000GenomesSouth AsianSub978A=0.040G=0.960
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.198G=0.802
The Genome Aggregation DatabaseAfricanSub8726A=0.049G=0.951
The Genome Aggregation DatabaseAmericanSub838A=0.100G=0.900
The Genome Aggregation DatabaseEast AsianSub1618A=0.002G=0.998
The Genome Aggregation DatabaseEuropeSub18480A=0.191G=0.808
The Genome Aggregation DatabaseGlobalStudy-wide29962A=0.136G=0.864
The Genome Aggregation DatabaseOtherSub300A=0.090G=0.910
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.116G=0.883
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.195G=0.805
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs31031772.54E-05alcohol consumption23953852

eQTL of rs3103177 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr1:92756507RP4-621B10.8ENSG00000273487.1A>G2.7662e-4101713Frontal_Cortex_BA9

meQTL of rs3103177 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr19276599492766180E0679487
chr19276599492766180E0689487
chr19276599492766180E0699487
chr19276599492766180E0709487
chr19276599492766180E0729487
chr19276599492766180E0739487
chr19276599492766180E0749487
chr19276599492766180E0829487








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr19276358892763688E0677081
chr19276373392765237E0677226
chr19276373392765237E0687226
chr19276373392765237E0697226
chr19276358892763688E0707081
chr19276373392765237E0707226
chr19276373392765237E0717226
chr19276373392765237E0727226
chr19276373392765237E0737226
chr19276373392765237E0747226
chr19276373392765237E0817226
chr19276358892763688E0827081
chr19276373392765237E0827226