Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 1 | NC_000001.11:g.92290950A>G |
GRCh37.p13 chr 1 | NC_000001.10:g.92756507A>G |
GLMN RefSeqGene | NG_009796.1:g.13060T>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
GLMN transcript variant 2 | NM_001319683.1:c. | N/A | Intron Variant |
GLMN transcript variant 1 | NM_053274.2:c. | N/A | Intron Variant |
GLMN transcript variant 3 | NR_135089.1:n. | N/A | Intron Variant |
GLMN transcript variant X7 | XM_005270401.3:c. | N/A | Intron Variant |
GLMN transcript variant X9 | XM_006710309.2:c. | N/A | Intron Variant |
GLMN transcript variant X3 | XM_011540546.2:c. | N/A | Intron Variant |
GLMN transcript variant X1 | XM_017000137.1:c. | N/A | Intron Variant |
GLMN transcript variant X2 | XM_017000138.1:c. | N/A | Intron Variant |
GLMN transcript variant X4 | XM_017000139.1:c. | N/A | Intron Variant |
GLMN transcript variant X5 | XM_017000140.1:c. | N/A | Intron Variant |
GLMN transcript variant X6 | XM_017000141.1:c. | N/A | Intron Variant |
GLMN transcript variant X10 | XM_017000142.1:c. | N/A | Intron Variant |
GLMN transcript variant X11 | XM_017000143.1:c. | N/A | Intron Variant |
GLMN transcript variant X13 | XM_017000144.1:c. | N/A | Intron Variant |
GLMN transcript variant X8 | XR_001736941.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.023 | G=0.977 |
1000Genomes | American | Sub | 694 | A=0.110 | G=0.890 |
1000Genomes | East Asian | Sub | 1008 | A=0.002 | G=0.998 |
1000Genomes | Europe | Sub | 1006 | A=0.194 | G=0.806 |
1000Genomes | Global | Study-wide | 5008 | A=0.068 | G=0.932 |
1000Genomes | South Asian | Sub | 978 | A=0.040 | G=0.960 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.198 | G=0.802 |
The Genome Aggregation Database | African | Sub | 8726 | A=0.049 | G=0.951 |
The Genome Aggregation Database | American | Sub | 838 | A=0.100 | G=0.900 |
The Genome Aggregation Database | East Asian | Sub | 1618 | A=0.002 | G=0.998 |
The Genome Aggregation Database | Europe | Sub | 18480 | A=0.191 | G=0.808 |
The Genome Aggregation Database | Global | Study-wide | 29962 | A=0.136 | G=0.864 |
The Genome Aggregation Database | Other | Sub | 300 | A=0.090 | G=0.910 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.116 | G=0.883 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.195 | G=0.805 |
PMID | Title | Author | Journal |
---|---|---|---|
23953852 | Genome-wide association studies of maximum number of drinks. | Pan Y | J Psychiatr Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs3103177 | 2.54E-05 | alcohol consumption | 23953852 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
---|---|---|---|---|---|---|
Chr1:92756507 | RP4-621B10.8 | ENSG00000273487.1 | A>G | 2.7662e-4 | 101713 | Frontal_Cortex_BA9 |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr1 | 92765994 | 92766180 | E067 | 9487 |
chr1 | 92765994 | 92766180 | E068 | 9487 |
chr1 | 92765994 | 92766180 | E069 | 9487 |
chr1 | 92765994 | 92766180 | E070 | 9487 |
chr1 | 92765994 | 92766180 | E072 | 9487 |
chr1 | 92765994 | 92766180 | E073 | 9487 |
chr1 | 92765994 | 92766180 | E074 | 9487 |
chr1 | 92765994 | 92766180 | E082 | 9487 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr1 | 92763588 | 92763688 | E067 | 7081 |
chr1 | 92763733 | 92765237 | E067 | 7226 |
chr1 | 92763733 | 92765237 | E068 | 7226 |
chr1 | 92763733 | 92765237 | E069 | 7226 |
chr1 | 92763588 | 92763688 | E070 | 7081 |
chr1 | 92763733 | 92765237 | E070 | 7226 |
chr1 | 92763733 | 92765237 | E071 | 7226 |
chr1 | 92763733 | 92765237 | E072 | 7226 |
chr1 | 92763733 | 92765237 | E073 | 7226 |
chr1 | 92763733 | 92765237 | E074 | 7226 |
chr1 | 92763733 | 92765237 | E081 | 7226 |
chr1 | 92763588 | 92763688 | E082 | 7081 |
chr1 | 92763733 | 92765237 | E082 | 7226 |