rs3120130

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0436 (13058/29898,GnomAD)
G=0495 (14438/29118,TOPMED)
G=0471 (2358/5008,1000G)
G=0353 (1360/3854,ALSPAC)
G=0352 (1304/3708,TWINSUK)
chr10:53583694 (GRCh38.p7) (10q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.53583694A>G
GRCh37.p13 chr 10NC_000010.10:g.55343454A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.272G=0.728
1000GenomesAmericanSub694A=0.670G=0.330
1000GenomesEast AsianSub1008A=0.663G=0.337
1000GenomesEuropeSub1006A=0.628G=0.372
1000GenomesGlobalStudy-wide5008A=0.529G=0.471
1000GenomesSouth AsianSub978A=0.540G=0.460
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.647G=0.353
The Genome Aggregation DatabaseAfricanSub8704A=0.350G=0.650
The Genome Aggregation DatabaseAmericanSub834A=0.730G=0.270
The Genome Aggregation DatabaseEast AsianSub1612A=0.687G=0.313
The Genome Aggregation DatabaseEuropeSub18446A=0.644G=0.355
The Genome Aggregation DatabaseGlobalStudy-wide29898A=0.563G=0.436
The Genome Aggregation DatabaseOtherSub302A=0.640G=0.360
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.504G=0.495
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.648G=0.352
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs31201300.000509alcohol dependence20201924

eQTL of rs3120130 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3120130 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.