rs317026

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0457 (13682/29882,GnomAD)
C=0466 (13573/29118,TOPMED)
C=0463 (2319/5008,1000G)
C=0474 (1826/3854,ALSPAC)
C=0485 (1798/3708,TWINSUK)
chr4:35412125 (GRCh38.p7) (4p15.1)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.35412125T>C
GRCh37.p13 chr 4NC_000004.11:g.35413747T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.546C=0.454
1000GenomesAmericanSub694T=0.500C=0.500
1000GenomesEast AsianSub1008T=0.650C=0.350
1000GenomesEuropeSub1006T=0.556C=0.444
1000GenomesGlobalStudy-wide5008T=0.537C=0.463
1000GenomesSouth AsianSub978T=0.420C=0.580
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.526C=0.474
The Genome Aggregation DatabaseAfricanSub8712T=0.556C=0.444
The Genome Aggregation DatabaseAmericanSub832T=0.460C=0.540
The Genome Aggregation DatabaseEast AsianSub1600T=0.679C=0.321
The Genome Aggregation DatabaseEuropeSub18436T=0.526C=0.473
The Genome Aggregation DatabaseGlobalStudy-wide29882T=0.542C=0.457
The Genome Aggregation DatabaseOtherSub302T=0.580C=0.420
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.533C=0.466
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.515C=0.485
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs3170260.000178nicotine dependence17158188

eQTL of rs317026 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs317026 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.