rs329200

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0386 (11513/29824,GnomAD)
G=0422 (12314/29118,TOPMED)
A==0482 (2413/5008,1000G)
G=0238 (919/3854,ALSPAC)
G=0241 (895/3708,TWINSUK)
chr9:85180311 (GRCh38.p7) (9q21.33)
AD
GWASdb2
1   publication(s)
See rs on genome
76 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.85180311A>G
GRCh37.p13 chr 9NC_000009.11:g.87795226A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.346G=0.654
1000GenomesAmericanSub694A=0.730G=0.270
1000GenomesEast AsianSub1008A=0.342G=0.658
1000GenomesEuropeSub1006A=0.724G=0.276
1000GenomesGlobalStudy-wide5008A=0.482G=0.518
1000GenomesSouth AsianSub978A=0.390G=0.610
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.762G=0.238
The Genome Aggregation DatabaseAfricanSub8688A=0.401G=0.599
The Genome Aggregation DatabaseAmericanSub834A=0.760G=0.240
The Genome Aggregation DatabaseEast AsianSub1618A=0.372G=0.628
The Genome Aggregation DatabaseEuropeSub18388A=0.728G=0.271
The Genome Aggregation DatabaseGlobalStudy-wide29824A=0.614G=0.386
The Genome Aggregation DatabaseOtherSub296A=0.690G=0.310
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.577G=0.422
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.759G=0.241
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs3292000.0009alcohol dependence20201924

eQTL of rs329200 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs329200 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr98777214087772419E067-22807
chr98779322687793885E067-1341
chr98781738787818364E06722161
chr98781863587818685E06723409
chr98781911887819172E06723892
chr98781922087819483E06723994
chr98781956387819687E06724337
chr98775747287757804E068-37422
chr98777168287771827E068-23399
chr98777191087771960E068-23266
chr98777214087772419E068-22807
chr98777263487772684E068-22542
chr98777271087772770E068-22456
chr98781692687817162E06821700
chr98781722387817263E06821997
chr98781738787818364E06822161
chr98779322687793885E069-1341
chr98781722387817263E06921997
chr98781738787818364E06922161
chr98781863587818685E06923409
chr98781911887819172E06923892
chr98782866787829455E06933441
chr98779322687793885E070-1341
chr98782866787829455E07033441
chr98783062087830825E07035394
chr98783100087831104E07035774
chr98775747287757804E071-37422
chr98777118987771254E071-23972
chr98777134987771433E071-23793
chr98777144587771576E071-23650
chr98777168287771827E071-23399
chr98777191087771960E071-23266
chr98777263487772684E071-22542
chr98777271087772770E071-22456
chr98779322687793885E071-1341
chr98779425387794297E071-929
chr98781738787818364E07122161
chr98781863587818685E07123409
chr98781911887819172E07123892
chr98781922087819483E07123994
chr98781956387819687E07124337
chr98781970487819764E07124478
chr98781978287819832E07124556
chr98775747287757804E072-37422
chr98777168287771827E072-23399
chr98777191087771960E072-23266
chr98777214087772419E072-22807
chr98777263487772684E072-22542
chr98777271087772770E072-22456
chr98777284587773029E072-22197
chr98779322687793885E072-1341
chr98781722387817263E07221997
chr98781738787818364E07222161
chr98781863587818685E07223409
chr98781911887819172E07223892
chr98781922087819483E07223994
chr98775747287757804E073-37422
chr98779322687793885E073-1341
chr98781738787818364E07322161
chr98781970487819764E07324478
chr98775729387757378E074-37848
chr98775747287757804E074-37422
chr98779322687793885E074-1341
chr98781722387817263E07421997
chr98781738787818364E07422161
chr98781863587818685E07423409
chr98781911887819172E07423892
chr98775171587751880E081-43346
chr98777214087772419E081-22807
chr98776542187765555E082-29671
chr98776600587766545E082-28681
chr98776661787767239E082-27987
chr98777214087772419E082-22807
chr98777263487772684E082-22542
chr98777271087772770E082-22456
chr98777284587773029E082-22197