rs329219

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0392 (11737/29920,GnomAD)
A=0434 (12644/29118,TOPMED)
G==0471 (2358/5008,1000G)
A=0237 (915/3854,ALSPAC)
A=0241 (895/3708,TWINSUK)
chr9:85188074 (GRCh38.p7) (9q21.33)
AD
GWASdb2
1   publication(s)
See rs on genome
75 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.85188074G>A
GRCh37.p13 chr 9NC_000009.11:g.87802989G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.295A=0.705
1000GenomesAmericanSub694G=0.720A=0.280
1000GenomesEast AsianSub1008G=0.357A=0.643
1000GenomesEuropeSub1006G=0.725A=0.275
1000GenomesGlobalStudy-wide5008G=0.471A=0.529
1000GenomesSouth AsianSub978G=0.390A=0.610
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.763A=0.237
The Genome Aggregation DatabaseAfricanSub8706G=0.373A=0.627
The Genome Aggregation DatabaseAmericanSub838G=0.760A=0.240
The Genome Aggregation DatabaseEast AsianSub1608G=0.380A=0.620
The Genome Aggregation DatabaseEuropeSub18466G=0.729A=0.270
The Genome Aggregation DatabaseGlobalStudy-wide29920G=0.607A=0.392
The Genome Aggregation DatabaseOtherSub302G=0.700A=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.565A=0.434
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.759A=0.241
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs3292190.00096alcohol dependence20201924

eQTL of rs329219 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs329219 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr98777214087772419E067-30570
chr98779322687793885E067-9104
chr98781738787818364E06714398
chr98781863587818685E06715646
chr98781911887819172E06716129
chr98781922087819483E06716231
chr98781956387819687E06716574
chr98775747287757804E068-45185
chr98777168287771827E068-31162
chr98777191087771960E068-31029
chr98777214087772419E068-30570
chr98777263487772684E068-30305
chr98777271087772770E068-30219
chr98781692687817162E06813937
chr98781722387817263E06814234
chr98781738787818364E06814398
chr98779322687793885E069-9104
chr98781722387817263E06914234
chr98781738787818364E06914398
chr98781863587818685E06915646
chr98781911887819172E06916129
chr98782866787829455E06925678
chr98779322687793885E070-9104
chr98782866787829455E07025678
chr98783062087830825E07027631
chr98783100087831104E07028011
chr98775747287757804E071-45185
chr98777118987771254E071-31735
chr98777134987771433E071-31556
chr98777144587771576E071-31413
chr98777168287771827E071-31162
chr98777191087771960E071-31029
chr98777263487772684E071-30305
chr98777271087772770E071-30219
chr98779322687793885E071-9104
chr98779425387794297E071-8692
chr98781738787818364E07114398
chr98781863587818685E07115646
chr98781911887819172E07116129
chr98781922087819483E07116231
chr98781956387819687E07116574
chr98781970487819764E07116715
chr98781978287819832E07116793
chr98775747287757804E072-45185
chr98777168287771827E072-31162
chr98777191087771960E072-31029
chr98777214087772419E072-30570
chr98777263487772684E072-30305
chr98777271087772770E072-30219
chr98777284587773029E072-29960
chr98779322687793885E072-9104
chr98781722387817263E07214234
chr98781738787818364E07214398
chr98781863587818685E07215646
chr98781911887819172E07216129
chr98781922087819483E07216231
chr98775747287757804E073-45185
chr98779322687793885E073-9104
chr98781738787818364E07314398
chr98781970487819764E07316715
chr98775729387757378E074-45611
chr98775747287757804E074-45185
chr98779322687793885E074-9104
chr98781722387817263E07414234
chr98781738787818364E07414398
chr98781863587818685E07415646
chr98781911887819172E07416129
chr98777214087772419E081-30570
chr98776542187765555E082-37434
chr98776600587766545E082-36444
chr98776661787767239E082-35750
chr98777214087772419E082-30570
chr98777263487772684E082-30305
chr98777271087772770E082-30219
chr98777284587773029E082-29960