rs334960

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0331 (9883/29848,GnomAD)
T=0286 (8330/29118,TOPMED)
T=0252 (1264/5008,1000G)
T=0423 (1629/3854,ALSPAC)
T=0435 (1612/3708,TWINSUK)
chr3:18569385 (GRCh38.p7) (3p24.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.18569385C>T
GRCh37.p13 chr 3NC_000003.11:g.18610877C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.930T=0.070
1000GenomesAmericanSub694C=0.730T=0.270
1000GenomesEast AsianSub1008C=0.720T=0.280
1000GenomesEuropeSub1006C=0.600T=0.400
1000GenomesGlobalStudy-wide5008C=0.748T=0.252
1000GenomesSouth AsianSub978C=0.700T=0.300
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.577T=0.423
The Genome Aggregation DatabaseAfricanSub8710C=0.881T=0.119
The Genome Aggregation DatabaseAmericanSub834C=0.740T=0.260
The Genome Aggregation DatabaseEast AsianSub1568C=0.710T=0.290
The Genome Aggregation DatabaseEuropeSub18434C=0.562T=0.437
The Genome Aggregation DatabaseGlobalStudy-wide29848C=0.668T=0.331
The Genome Aggregation DatabaseOtherSub302C=0.640T=0.360
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.713T=0.286
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.565T=0.435
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs3349600.00043alcohol dependence20201924

eQTL of rs334960 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs334960 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.