| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.140588564A>G |
| GRCh37.p13 chr 3 | NC_000003.11:g.140307406A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.188 | G=0.812 |
| 1000Genomes | American | Sub | 694 | A=0.590 | G=0.410 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.130 | G=0.870 |
| 1000Genomes | Europe | Sub | 1006 | A=0.794 | G=0.206 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.438 | G=0.562 |
| 1000Genomes | South Asian | Sub | 978 | A=0.620 | G=0.380 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.827 | G=0.173 |
| The Genome Aggregation Database | African | Sub | 8704 | A=0.260 | G=0.740 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.550 | G=0.450 |
| The Genome Aggregation Database | East Asian | Sub | 1610 | A=0.125 | G=0.875 |
| The Genome Aggregation Database | Europe | Sub | 18486 | A=0.817 | G=0.182 |
| The Genome Aggregation Database | Global | Study-wide | 29940 | A=0.610 | G=0.389 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.810 | G=0.190 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.518 | G=0.481 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.824 | G=0.176 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs347964 | 0.000538 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 140288121 | 140288233 | E068 | -19173 |
| chr3 | 140289857 | 140289975 | E068 | -17431 |
| chr3 | 140290894 | 140290960 | E068 | -16446 |
| chr3 | 140288121 | 140288233 | E071 | -19173 |
| chr3 | 140292045 | 140292111 | E071 | -15295 |
| chr3 | 140348256 | 140349459 | E071 | 40850 |
| chr3 | 140290894 | 140290960 | E074 | -16446 |
| chr3 | 140348256 | 140349459 | E074 | 40850 |
| chr3 | 140289597 | 140289776 | E082 | -17630 |
| chr3 | 140289857 | 140289975 | E082 | -17431 |
| chr3 | 140290894 | 140290960 | E082 | -16446 |