rs34929064

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0234 (7041/29970,GnomAD)
C=0225 (6556/29118,TOPMED)
C=0218 (1094/5008,1000G)
C=0248 (954/3854,ALSPAC)
C=0261 (968/3708,TWINSUK)
chr7:22688653 (GRCh38.p7) (7p15.3)
AD
GWASCatalog
1   publication(s)
See rs on genome
28 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.22688653T>C
GRCh37.p13 chr 7NC_000007.13:g.22728272T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.783C=0.217
1000GenomesAmericanSub694T=0.750C=0.250
1000GenomesEast AsianSub1008T=0.839C=0.161
1000GenomesEuropeSub1006T=0.751C=0.249
1000GenomesGlobalStudy-wide5008T=0.782C=0.218
1000GenomesSouth AsianSub978T=0.770C=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.752C=0.248
The Genome Aggregation DatabaseAfricanSub8722T=0.777C=0.223
The Genome Aggregation DatabaseAmericanSub838T=0.730C=0.270
The Genome Aggregation DatabaseEast AsianSub1614T=0.838C=0.162
The Genome Aggregation DatabaseEuropeSub18494T=0.756C=0.244
The Genome Aggregation DatabaseGlobalStudy-wide29970T=0.765C=0.234
The Genome Aggregation DatabaseOtherSub302T=0.700C=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.774C=0.225
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.739C=0.261
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs349290647E-06alcohol dependence29071344

eQTL of rs34929064 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs34929064 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr72269340522694170E068-34102
chr72276085322761294E06832581
chr72269340522694170E069-34102
chr72276259122763617E06934319
chr72277072522771343E06942453
chr72269340522694170E071-34102
chr72273972322739815E07111451
chr72276085322761294E07132581
chr72276146022761576E07133188
chr72276189222761942E07133620
chr72276203422762437E07133762
chr72276259122763617E07134319
chr72276376822763846E07135496
chr72276398322764062E07135711
chr72276414022764202E07135868
chr72276424222764328E07135970
chr72276440922764890E07136137
chr72276499822765086E07136726
chr72276777122767955E07139499
chr72276259122763617E07234319
chr72276259122763617E07334319
chr72276059122760660E07432319
chr72276066122760726E07432389
chr72276085322761294E07432581
chr72276259122763617E07434319
chr72270282122703364E081-24908
chr72272768722728074E081-198
chr72269340522694170E082-34102