rs350212

Homo sapiens
A>G
SNX29 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0040 (1218/29992,GnomAD)
G=0064 (1883/29118,TOPMED)
G=0043 (213/5008,1000G)
chr16:12060521 (GRCh38.p7) (16p13.13)
AD
GWASdb2
1   publication(s)
See rs on genome
179 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.12060521A>G
GRCh37.p13 chr 16NC_000016.9:g.12154378A>G

Gene: SNX29, sorting nexin 29(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SNX29 transcriptNM_032167.4:c.N/AIntron Variant
SNX29 transcript variant X9XM_005255682.3:c.N/AIntron Variant
SNX29 transcript variant X12XM_005255683.3:c.N/AIntron Variant
SNX29 transcript variant X1XM_011522738.2:c.N/AIntron Variant
SNX29 transcript variant X5XM_011522741.2:c.N/AIntron Variant
SNX29 transcript variant X7XM_011522743.2:c.N/AIntron Variant
SNX29 transcript variant X10XM_011522744.2:c.N/AIntron Variant
SNX29 transcript variant X3XM_017023871.1:c.N/AIntron Variant
SNX29 transcript variant X4XM_017023872.1:c.N/AIntron Variant
SNX29 transcript variant X6XM_017023873.1:c.N/AIntron Variant
SNX29 transcript variant X8XM_017023874.1:c.N/AIntron Variant
SNX29 transcript variant X11XM_017023875.1:c.N/AIntron Variant
SNX29 transcript variant X13XM_017023876.1:c.N/AIntron Variant
SNX29 transcript variant X14XM_017023877.1:c.N/AIntron Variant
SNX29 transcript variant X15XM_017023878.1:c.N/AGenic Upstream Transcript Variant
SNX29 transcript variant X2XR_001752024.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.846G=0.154
1000GenomesAmericanSub694A=0.990G=0.010
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=0.999G=0.001
1000GenomesGlobalStudy-wide5008A=0.957G=0.043
1000GenomesSouth AsianSub978A=1.000G=0.000
The Genome Aggregation DatabaseAfricanSub8726A=0.862G=0.138
The Genome Aggregation DatabaseAmericanSub838A=1.000G=0.000
The Genome Aggregation DatabaseEast AsianSub1622A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18504A=0.999G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29992A=0.959G=0.040
The Genome Aggregation DatabaseOtherSub302A=0.990G=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.935G=0.064
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs3502120.000275alcohol dependence21314694

eQTL of rs350212 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs350212 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr161212914412129335E067-25043
chr161212938712129438E067-24940
chr161212959012129644E067-24734
chr161212971712129910E067-24468
chr161214826612148646E067-5732
chr161214883412148970E067-5408
chr161215088012150970E067-3408
chr161215109712151547E067-2831
chr161215627712157047E0671899
chr161218138712181474E06727009
chr161218153012181611E06727152
chr161218170312181843E06727325
chr161218189312182262E06727515
chr161218228312182422E06727905
chr161218566212186867E06731284
chr161218840912190625E06734031
chr161219063612191043E06736258
chr161219104612191925E06736668
chr161219197912192051E06737601
chr161212064212121486E068-32892
chr161212409412124220E068-30158
chr161212454712124747E068-29631
chr161212914412129335E068-25043
chr161212938712129438E068-24940
chr161212959012129644E068-24734
chr161212971712129910E068-24468
chr161215109712151547E068-2831
chr161215627712157047E0681899
chr161216161812162118E0687240
chr161218170312181843E06827325
chr161218189312182262E06827515
chr161218228312182422E06827905
chr161218301512183083E06828637
chr161218566212186867E06831284
chr161218840912190625E06834031
chr161219063612191043E06836258
chr161219104612191925E06836668
chr161219197912192051E06837601
chr161212064212121486E069-32892
chr161212454712124747E069-29631
chr161212959012129644E069-24734
chr161212971712129910E069-24468
chr161213000512130056E069-24322
chr161213066812130722E069-23656
chr161213082212131281E069-23097
chr161214826612148646E069-5732
chr161215028412150529E069-3849
chr161215088012150970E069-3408
chr161215109712151547E069-2831
chr161215302312153586E069-792
chr161218153012181611E06927152
chr161218170312181843E06927325
chr161218189312182262E06927515
chr161218566212186867E06931284
chr161218840912190625E06934031
chr161219063612191043E06936258
chr161219104612191925E06936668
chr161219197912192051E06937601
chr161219214112192251E06937763
chr161219225212192579E06937874
chr161219268612192784E06938308
chr161218566212186867E07031284
chr161218840912190625E07034031
chr161219063612191043E07036258
chr161219104612191925E07036668
chr161219197912192051E07037601
chr161211944112120321E071-34057
chr161212034012120455E071-33923
chr161212049012120582E071-33796
chr161212064212121486E071-32892
chr161212409412124220E071-30158
chr161212938712129438E071-24940
chr161213000512130056E071-24322
chr161213051512130605E071-23773
chr161213066812130722E071-23656
chr161213082212131281E071-23097
chr161214826612148646E071-5732
chr161215028412150529E071-3849
chr161215088012150970E071-3408
chr161215302312153586E071-792
chr161215362512153843E071-535
chr161216161812162118E0717240
chr161218445312184530E07130075
chr161218566212186867E07131284
chr161218686812186937E07132490
chr161218696012187046E07132582
chr161218840912190625E07134031
chr161219063612191043E07136258
chr161219104612191925E07136668
chr161219197912192051E07137601
chr161219214112192251E07137763
chr161219225212192579E07137874
chr161212064212121486E072-32892
chr161212454712124747E072-29631
chr161212914412129335E072-25043
chr161212938712129438E072-24940
chr161212959012129644E072-24734
chr161212971712129910E072-24468
chr161213000512130056E072-24322
chr161213051512130605E072-23773
chr161213066812130722E072-23656
chr161213082212131281E072-23097
chr161214826612148646E072-5732
chr161215028412150529E072-3849
chr161215088012150970E072-3408
chr161215109712151547E072-2831
chr161215302312153586E072-792
chr161215627712157047E0721899
chr161216161812162118E0727240
chr161218138712181474E07227009
chr161218153012181611E07227152
chr161218170312181843E07227325
chr161218189312182262E07227515
chr161218566212186867E07231284
chr161218840912190625E07234031
chr161219063612191043E07236258
chr161219104612191925E07236668
chr161219197912192051E07237601
chr161219214112192251E07237763
chr161219225212192579E07237874
chr161219268612192784E07238308
chr161212959012129644E073-24734
chr161212971712129910E073-24468
chr161213000512130056E073-24322
chr161213066812130722E073-23656
chr161213082212131281E073-23097
chr161218153012181611E07327152
chr161218170312181843E07327325
chr161218566212186867E07331284
chr161218840912190625E07334031
chr161219063612191043E07336258
chr161219104612191925E07336668
chr161210462812104973E074-49405
chr161212064212121486E074-32892
chr161212409412124220E074-30158
chr161212914412129335E074-25043
chr161212938712129438E074-24940
chr161212959012129644E074-24734
chr161212971712129910E074-24468
chr161213000512130056E074-24322
chr161213051512130605E074-23773
chr161213066812130722E074-23656
chr161213082212131281E074-23097
chr161214826612148646E074-5732
chr161214883412148970E074-5408
chr161215088012150970E074-3408
chr161215109712151547E074-2831
chr161215302312153586E074-792
chr161215627712157047E0741899
chr161218153012181611E07427152
chr161218170312181843E07427325
chr161218566212186867E07431284
chr161218686812186937E07432490
chr161218696012187046E07432582
chr161218840912190625E07434031
chr161219063612191043E07436258
chr161219104612191925E07436668
chr161219197912192051E07437601
chr161211944112120321E081-34057
chr161212034012120455E081-33923
chr161212049012120582E081-33796
chr161212064212121486E081-32892
chr161212409412124220E081-30158
chr161212454712124747E081-29631
chr161218840912190625E08134031
chr161219063612191043E08136258
chr161219104612191925E08136668
chr161219214112192251E08137763
chr161219225212192579E08137874
chr161212034012120455E082-33923
chr161212049012120582E082-33796
chr161212064212121486E082-32892
chr161213266612132785E082-21593
chr161218566212186867E08231284
chr161218686812186937E08232490
chr161218696012187046E08232582
chr161218840912190625E08234031
chr161219063612191043E08236258
chr161219104612191925E08236668