SNP Detail Info-rs35569480

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 16	NC_000016.10:g.7105447A>G
GRCh37.p13 chr 16	NC_000016.9:g.7155448A>G
RBFOX1 RefSeqGene	NG_011881.1:g.1091317A>G

Gene: RBFOX1, RNA binding protein, fox-1 homolog 1(plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
RBFOX1 transcript variant 5	NM_001142333.1:c.	N/A	Intron Variant
RBFOX1 transcript variant 6	NM_001142334.1:c.	N/A	Intron Variant
RBFOX1 transcript variant 7	NM_001308117.1:c.	N/A	Intron Variant
RBFOX1 transcript variant 4	NM_018723.3:c.	N/A	Intron Variant
RBFOX1 transcript variant 1	NM_145891.2:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant 2	NM_145892.2:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant 3	NM_145893.2:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X11	XM_005255390.3:c.	N/A	Intron Variant
RBFOX1 transcript variant X12	XM_005255391.3:c.	N/A	Intron Variant
RBFOX1 transcript variant X1	XM_017023318.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X2	XM_017023319.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X3	XM_017023320.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X4	XM_017023321.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X5	XM_017023322.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X9	XM_017023324.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X13	XM_017023325.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X14	XM_017023326.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X16	XM_017023328.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X18	XM_017023329.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X21	XM_017023330.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X24	XM_017023333.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X26	XM_017023335.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X36	XM_017023336.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X38	XM_017023338.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X41	XM_017023340.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X33	XM_017023341.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X44	XM_017023342.1:c.	N/A	Intron Variant
RBFOX1 transcript variant X6	XM_005255386.3:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X8	XM_005255387.3:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X10	XM_005255388.4:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X28	XM_005255394.4:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X18	XM_011522546.2:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X26	XM_011522547.2:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X39	XM_011522548.2:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X7	XM_017023323.1:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X16	XM_017023327.1:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X20	XM_017023331.1:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X23	XM_017023332.1:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X25	XM_017023334.1:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X37	XM_017023337.1:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X30	XM_017023339.1:c.	N/A	Genic Upstream Transcript Variant
RBFOX1 transcript variant X35	XM_017023343.1:c.	N/A	Genic Upstream Transcript Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.829	G=0.171
1000Genomes	American	Sub	694	A=0.690	G=0.310
1000Genomes	East Asian	Sub	1008	A=0.823	G=0.177
1000Genomes	Europe	Sub	1006	A=0.624	G=0.376
1000Genomes	Global	Study-wide	5008	A=0.726	G=0.274
1000Genomes	South Asian	Sub	978	A=0.620	G=0.380
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.606	G=0.394
The Genome Aggregation Database	African	Sub	8688	A=0.801	G=0.199
The Genome Aggregation Database	American	Sub	834	A=0.710	G=0.290
The Genome Aggregation Database	East Asian	Sub	1614	A=0.827	G=0.173
The Genome Aggregation Database	Europe	Sub	18418	A=0.624	G=0.375
The Genome Aggregation Database	Global	Study-wide	29854	A=0.689	G=0.310
The Genome Aggregation Database	Other	Sub	300	A=0.690	G=0.310
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.708	G=0.291
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.599	G=0.401

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

P-Value

SNP ID	p-value	Traits	Study
rs35569480	6.4E-05	alcohol consumption	23743675

eQTL of rs35569480 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs35569480 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr16	7147175	7147346	E071	-8102
chr16	7147630	7147777	E071	-7671
chr16	7147940	7148010	E071	-7438
chr16	7183855	7183915	E081	28407
chr16	7140709	7140836	E082	-14612
chr16	7140867	7141113	E082	-14335

rs35569480

Genomic Coordinates

Gene: RBFOX1, RNA binding protein, fox-1 homolog 1(plus strand)

Population Frequency

P-Value

eQTL of rs35569480 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs35569480 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)