Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.13267240G>C |
GRCh37.p13 chr 3 | NC_000003.11:g.13308740G>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
IQSEC1 transcript variant 1 | NM_001134382.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant 2 | NM_014869.6:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X1 | XM_011534304.2:c. | N/A | Intron Variant |
IQSEC1 transcript variant X8 | XM_011534310.2:c. | N/A | Intron Variant |
IQSEC1 transcript variant X2 | XM_017007581.1:c. | N/A | Intron Variant |
IQSEC1 transcript variant X3 | XM_017007582.1:c. | N/A | Intron Variant |
IQSEC1 transcript variant X2 | XM_011534305.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X5 | XM_011534306.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X4 | XM_011534307.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X5 | XM_011534308.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X7 | XM_011534311.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X8 | XM_011534312.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X10 | XM_011534313.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X9 | XM_011534314.2:c. | N/A | Genic Upstream Transcript Variant |
IQSEC1 transcript variant X13 | XM_011534315.2:c. | N/A | Genic Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.926 | C=0.074 |
1000Genomes | American | Sub | 694 | G=0.570 | C=0.430 |
1000Genomes | East Asian | Sub | 1008 | G=0.634 | C=0.366 |
1000Genomes | Europe | Sub | 1006 | G=0.565 | C=0.435 |
1000Genomes | Global | Study-wide | 5008 | G=0.682 | C=0.318 |
1000Genomes | South Asian | Sub | 978 | G=0.600 | C=0.400 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.566 | C=0.434 |
The Genome Aggregation Database | African | Sub | 8640 | G=0.875 | C=0.125 |
The Genome Aggregation Database | American | Sub | 824 | G=0.570 | C=0.430 |
The Genome Aggregation Database | East Asian | Sub | 1598 | G=0.619 | C=0.381 |
The Genome Aggregation Database | Europe | Sub | 18374 | G=0.597 | C=0.402 |
The Genome Aggregation Database | Global | Study-wide | 29738 | G=0.677 | C=0.322 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.540 | C=0.460 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.724 | C=0.275 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.595 | C=0.405 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs357159 | 0.000633 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 13301507 | 13301558 | E067 | -7182 |
chr3 | 13301937 | 13302031 | E067 | -6709 |
chr3 | 13302622 | 13302746 | E067 | -5994 |
chr3 | 13303047 | 13303120 | E067 | -5620 |
chr3 | 13314752 | 13314918 | E067 | 6012 |
chr3 | 13314977 | 13315064 | E067 | 6237 |
chr3 | 13315240 | 13315298 | E067 | 6500 |
chr3 | 13315869 | 13316427 | E067 | 7129 |
chr3 | 13318186 | 13318319 | E067 | 9446 |
chr3 | 13318402 | 13318598 | E067 | 9662 |
chr3 | 13319606 | 13319673 | E067 | 10866 |
chr3 | 13319914 | 13320009 | E067 | 11174 |
chr3 | 13342599 | 13342683 | E067 | 33859 |
chr3 | 13342751 | 13343435 | E067 | 34011 |
chr3 | 13349918 | 13350305 | E067 | 41178 |
chr3 | 13358316 | 13358399 | E067 | 49576 |
chr3 | 13265171 | 13265317 | E068 | -43423 |
chr3 | 13265399 | 13265648 | E068 | -43092 |
chr3 | 13273357 | 13273522 | E068 | -35218 |
chr3 | 13273893 | 13273945 | E068 | -34795 |
chr3 | 13275480 | 13275566 | E068 | -33174 |
chr3 | 13275567 | 13275734 | E068 | -33006 |
chr3 | 13275775 | 13276018 | E068 | -32722 |
chr3 | 13285075 | 13285129 | E068 | -23611 |
chr3 | 13285321 | 13285490 | E068 | -23250 |
chr3 | 13291292 | 13291400 | E068 | -17340 |
chr3 | 13291511 | 13291623 | E068 | -17117 |
chr3 | 13291646 | 13291821 | E068 | -16919 |
chr3 | 13301507 | 13301558 | E068 | -7182 |
chr3 | 13301937 | 13302031 | E068 | -6709 |
chr3 | 13302622 | 13302746 | E068 | -5994 |
chr3 | 13310584 | 13310739 | E068 | 1844 |
chr3 | 13310797 | 13310930 | E068 | 2057 |
chr3 | 13314752 | 13314918 | E068 | 6012 |
chr3 | 13314977 | 13315064 | E068 | 6237 |
chr3 | 13315240 | 13315298 | E068 | 6500 |
chr3 | 13315869 | 13316427 | E068 | 7129 |
chr3 | 13318186 | 13318319 | E068 | 9446 |
chr3 | 13318402 | 13318598 | E068 | 9662 |
chr3 | 13319606 | 13319673 | E068 | 10866 |
chr3 | 13322440 | 13322501 | E068 | 13700 |
chr3 | 13342599 | 13342683 | E068 | 33859 |
chr3 | 13342751 | 13343435 | E068 | 34011 |
chr3 | 13349918 | 13350305 | E068 | 41178 |
chr3 | 13358316 | 13358399 | E068 | 49576 |
chr3 | 13277562 | 13277686 | E069 | -31054 |
chr3 | 13285075 | 13285129 | E069 | -23611 |
chr3 | 13285321 | 13285490 | E069 | -23250 |
chr3 | 13301507 | 13301558 | E069 | -7182 |
chr3 | 13301937 | 13302031 | E069 | -6709 |
chr3 | 13310584 | 13310739 | E069 | 1844 |
chr3 | 13310797 | 13310930 | E069 | 2057 |
chr3 | 13314752 | 13314918 | E069 | 6012 |
chr3 | 13314977 | 13315064 | E069 | 6237 |
chr3 | 13315240 | 13315298 | E069 | 6500 |
chr3 | 13315869 | 13316427 | E069 | 7129 |
chr3 | 13318186 | 13318319 | E069 | 9446 |
chr3 | 13319606 | 13319673 | E069 | 10866 |
chr3 | 13319914 | 13320009 | E069 | 11174 |
chr3 | 13320677 | 13320915 | E069 | 11937 |
chr3 | 13358316 | 13358399 | E069 | 49576 |
chr3 | 13277562 | 13277686 | E070 | -31054 |
chr3 | 13278100 | 13278150 | E070 | -30590 |
chr3 | 13278211 | 13278318 | E070 | -30422 |
chr3 | 13284830 | 13284880 | E070 | -23860 |
chr3 | 13285075 | 13285129 | E070 | -23611 |
chr3 | 13285321 | 13285490 | E070 | -23250 |
chr3 | 13291292 | 13291400 | E070 | -17340 |
chr3 | 13291511 | 13291623 | E070 | -17117 |
chr3 | 13308939 | 13309050 | E070 | 199 |
chr3 | 13314752 | 13314918 | E070 | 6012 |
chr3 | 13314977 | 13315064 | E070 | 6237 |
chr3 | 13315240 | 13315298 | E070 | 6500 |
chr3 | 13315869 | 13316427 | E070 | 7129 |
chr3 | 13319249 | 13319336 | E070 | 10509 |
chr3 | 13319606 | 13319673 | E070 | 10866 |
chr3 | 13319914 | 13320009 | E070 | 11174 |
chr3 | 13342599 | 13342683 | E070 | 33859 |
chr3 | 13342751 | 13343435 | E070 | 34011 |
chr3 | 13261081 | 13261706 | E071 | -47034 |
chr3 | 13285075 | 13285129 | E071 | -23611 |
chr3 | 13285321 | 13285490 | E071 | -23250 |
chr3 | 13300711 | 13301149 | E071 | -7591 |
chr3 | 13301507 | 13301558 | E071 | -7182 |
chr3 | 13301937 | 13302031 | E071 | -6709 |
chr3 | 13302622 | 13302746 | E071 | -5994 |
chr3 | 13314752 | 13314918 | E071 | 6012 |
chr3 | 13314977 | 13315064 | E071 | 6237 |
chr3 | 13315240 | 13315298 | E071 | 6500 |
chr3 | 13315869 | 13316427 | E071 | 7129 |
chr3 | 13318186 | 13318319 | E071 | 9446 |
chr3 | 13318402 | 13318598 | E071 | 9662 |
chr3 | 13319249 | 13319336 | E071 | 10509 |
chr3 | 13319606 | 13319673 | E071 | 10866 |
chr3 | 13322280 | 13322340 | E071 | 13540 |
chr3 | 13322440 | 13322501 | E071 | 13700 |
chr3 | 13342599 | 13342683 | E071 | 33859 |
chr3 | 13342751 | 13343435 | E071 | 34011 |
chr3 | 13358316 | 13358399 | E071 | 49576 |
chr3 | 13265171 | 13265317 | E072 | -43423 |
chr3 | 13265399 | 13265648 | E072 | -43092 |
chr3 | 13285321 | 13285490 | E072 | -23250 |
chr3 | 13293221 | 13293375 | E072 | -15365 |
chr3 | 13300711 | 13301149 | E072 | -7591 |
chr3 | 13301507 | 13301558 | E072 | -7182 |
chr3 | 13301937 | 13302031 | E072 | -6709 |
chr3 | 13310584 | 13310739 | E072 | 1844 |
chr3 | 13310797 | 13310930 | E072 | 2057 |
chr3 | 13314752 | 13314918 | E072 | 6012 |
chr3 | 13314977 | 13315064 | E072 | 6237 |
chr3 | 13315240 | 13315298 | E072 | 6500 |
chr3 | 13315869 | 13316427 | E072 | 7129 |
chr3 | 13318186 | 13318319 | E072 | 9446 |
chr3 | 13318402 | 13318598 | E072 | 9662 |
chr3 | 13319606 | 13319673 | E072 | 10866 |
chr3 | 13319914 | 13320009 | E072 | 11174 |
chr3 | 13322440 | 13322501 | E072 | 13700 |
chr3 | 13342751 | 13343435 | E072 | 34011 |
chr3 | 13358316 | 13358399 | E072 | 49576 |
chr3 | 13265171 | 13265317 | E073 | -43423 |
chr3 | 13295607 | 13295720 | E073 | -13020 |
chr3 | 13296077 | 13296157 | E073 | -12583 |
chr3 | 13301937 | 13302031 | E073 | -6709 |
chr3 | 13302622 | 13302746 | E073 | -5994 |
chr3 | 13314977 | 13315064 | E073 | 6237 |
chr3 | 13315240 | 13315298 | E073 | 6500 |
chr3 | 13315869 | 13316427 | E073 | 7129 |
chr3 | 13318186 | 13318319 | E073 | 9446 |
chr3 | 13318402 | 13318598 | E073 | 9662 |
chr3 | 13319914 | 13320009 | E073 | 11174 |
chr3 | 13322440 | 13322501 | E073 | 13700 |
chr3 | 13349918 | 13350305 | E073 | 41178 |
chr3 | 13358316 | 13358399 | E073 | 49576 |
chr3 | 13284830 | 13284880 | E074 | -23860 |
chr3 | 13285075 | 13285129 | E074 | -23611 |
chr3 | 13285321 | 13285490 | E074 | -23250 |
chr3 | 13301507 | 13301558 | E074 | -7182 |
chr3 | 13301937 | 13302031 | E074 | -6709 |
chr3 | 13314752 | 13314918 | E074 | 6012 |
chr3 | 13314977 | 13315064 | E074 | 6237 |
chr3 | 13315240 | 13315298 | E074 | 6500 |
chr3 | 13315869 | 13316427 | E074 | 7129 |
chr3 | 13318186 | 13318319 | E074 | 9446 |
chr3 | 13318402 | 13318598 | E074 | 9662 |
chr3 | 13319249 | 13319336 | E074 | 10509 |
chr3 | 13319606 | 13319673 | E074 | 10866 |
chr3 | 13358316 | 13358399 | E074 | 49576 |
chr3 | 13277228 | 13277307 | E081 | -31433 |
chr3 | 13278211 | 13278318 | E081 | -30422 |
chr3 | 13283394 | 13283446 | E081 | -25294 |
chr3 | 13290267 | 13290443 | E081 | -18297 |
chr3 | 13291292 | 13291400 | E081 | -17340 |
chr3 | 13291511 | 13291623 | E081 | -17117 |
chr3 | 13291646 | 13291821 | E081 | -16919 |
chr3 | 13310584 | 13310739 | E081 | 1844 |
chr3 | 13310797 | 13310930 | E081 | 2057 |
chr3 | 13318186 | 13318319 | E081 | 9446 |
chr3 | 13318402 | 13318598 | E081 | 9662 |
chr3 | 13318646 | 13319204 | E081 | 9906 |
chr3 | 13319249 | 13319336 | E081 | 10509 |
chr3 | 13319606 | 13319673 | E081 | 10866 |
chr3 | 13338250 | 13338468 | E081 | 29510 |
chr3 | 13342599 | 13342683 | E081 | 33859 |
chr3 | 13342751 | 13343435 | E081 | 34011 |
chr3 | 13291292 | 13291400 | E082 | -17340 |
chr3 | 13291511 | 13291623 | E082 | -17117 |
chr3 | 13293221 | 13293375 | E082 | -15365 |
chr3 | 13297526 | 13297608 | E082 | -11132 |
chr3 | 13310584 | 13310739 | E082 | 1844 |
chr3 | 13310797 | 13310930 | E082 | 2057 |
chr3 | 13318186 | 13318319 | E082 | 9446 |
chr3 | 13318402 | 13318598 | E082 | 9662 |
chr3 | 13318646 | 13319204 | E082 | 9906 |
chr3 | 13338250 | 13338468 | E082 | 29510 |
chr3 | 13339142 | 13339229 | E082 | 30402 |
chr3 | 13342599 | 13342683 | E082 | 33859 |
chr3 | 13342751 | 13343435 | E082 | 34011 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 13323097 | 13323344 | E067 | 14357 |
chr3 | 13323357 | 13323952 | E067 | 14617 |
chr3 | 13324141 | 13324208 | E067 | 15401 |
chr3 | 13324300 | 13324440 | E067 | 15560 |
chr3 | 13324449 | 13324540 | E067 | 15709 |
chr3 | 13324702 | 13325026 | E067 | 15962 |
chr3 | 13325181 | 13325371 | E067 | 16441 |
chr3 | 13323097 | 13323344 | E068 | 14357 |
chr3 | 13323357 | 13323952 | E068 | 14617 |
chr3 | 13324141 | 13324208 | E068 | 15401 |
chr3 | 13324300 | 13324440 | E068 | 15560 |
chr3 | 13324449 | 13324540 | E068 | 15709 |
chr3 | 13324702 | 13325026 | E068 | 15962 |
chr3 | 13325181 | 13325371 | E068 | 16441 |
chr3 | 13323097 | 13323344 | E069 | 14357 |
chr3 | 13323357 | 13323952 | E069 | 14617 |
chr3 | 13324141 | 13324208 | E069 | 15401 |
chr3 | 13324300 | 13324440 | E069 | 15560 |
chr3 | 13324449 | 13324540 | E069 | 15709 |
chr3 | 13324702 | 13325026 | E069 | 15962 |
chr3 | 13325181 | 13325371 | E069 | 16441 |
chr3 | 13324141 | 13324208 | E070 | 15401 |
chr3 | 13324300 | 13324440 | E070 | 15560 |
chr3 | 13324449 | 13324540 | E070 | 15709 |
chr3 | 13324702 | 13325026 | E070 | 15962 |
chr3 | 13323097 | 13323344 | E071 | 14357 |
chr3 | 13323357 | 13323952 | E071 | 14617 |
chr3 | 13324141 | 13324208 | E071 | 15401 |
chr3 | 13324300 | 13324440 | E071 | 15560 |
chr3 | 13324449 | 13324540 | E071 | 15709 |
chr3 | 13324702 | 13325026 | E071 | 15962 |
chr3 | 13325181 | 13325371 | E071 | 16441 |
chr3 | 13323097 | 13323344 | E072 | 14357 |
chr3 | 13323357 | 13323952 | E072 | 14617 |
chr3 | 13324141 | 13324208 | E072 | 15401 |
chr3 | 13324300 | 13324440 | E072 | 15560 |
chr3 | 13324449 | 13324540 | E072 | 15709 |
chr3 | 13324702 | 13325026 | E072 | 15962 |
chr3 | 13325181 | 13325371 | E072 | 16441 |
chr3 | 13323097 | 13323344 | E073 | 14357 |
chr3 | 13323357 | 13323952 | E073 | 14617 |
chr3 | 13324141 | 13324208 | E073 | 15401 |
chr3 | 13324300 | 13324440 | E073 | 15560 |
chr3 | 13324449 | 13324540 | E073 | 15709 |
chr3 | 13324702 | 13325026 | E073 | 15962 |
chr3 | 13325181 | 13325371 | E073 | 16441 |
chr3 | 13324702 | 13325026 | E074 | 15962 |
chr3 | 13325181 | 13325371 | E074 | 16441 |
chr3 | 13323097 | 13323344 | E082 | 14357 |
chr3 | 13323357 | 13323952 | E082 | 14617 |
chr3 | 13324141 | 13324208 | E082 | 15401 |
chr3 | 13324300 | 13324440 | E082 | 15560 |
chr3 | 13324449 | 13324540 | E082 | 15709 |
chr3 | 13324702 | 13325026 | E082 | 15962 |