Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 4 | NC_000004.12:g.57050738delT |
GRCh37.p13 chr 4 | NC_000004.11:g.57916904delT |
IGFBP7 RefSeqGene | NG_031877.1:g.64663delA |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | (T)16=0.690 | delT=0.310 |
1000Genomes | American | Sub | 694 | (T)16=0.710 | delT=0.290 |
1000Genomes | East Asian | Sub | 1008 | (T)16=0.555 | delT=0.445 |
1000Genomes | Europe | Sub | 1006 | (T)16=0.677 | delT=0.323 |
1000Genomes | Global | Study-wide | 5008 | (T)16=0.658 | delT=0.342 |
1000Genomes | South Asian | Sub | 978 | (T)16=0.660 | delT=0.340 |
PMID | Title | Author | Journal |
---|---|---|---|
29460428 | Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population. | Gelernter J | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs35769988 | 9E-06 | alcohol consumption measurement | 29460428 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr4 | 57921859 | 57922927 | E067 | 4955 |
chr4 | 57908817 | 57910887 | E068 | -6017 |
chr4 | 57911273 | 57911477 | E068 | -5427 |
chr4 | 57915161 | 57915370 | E068 | -1534 |
chr4 | 57921859 | 57922927 | E068 | 4955 |
chr4 | 57923931 | 57924070 | E068 | 7027 |
chr4 | 57929339 | 57929728 | E068 | 12435 |
chr4 | 57929763 | 57929813 | E068 | 12859 |
chr4 | 57929823 | 57929998 | E068 | 12919 |
chr4 | 57936692 | 57937261 | E068 | 19788 |
chr4 | 57937402 | 57937487 | E068 | 20498 |
chr4 | 57937528 | 57937826 | E068 | 20624 |
chr4 | 57944569 | 57945836 | E068 | 27665 |
chr4 | 57945858 | 57946117 | E068 | 28954 |
chr4 | 57948273 | 57948377 | E068 | 31369 |
chr4 | 57964607 | 57965822 | E068 | 47703 |
chr4 | 57921859 | 57922927 | E069 | 4955 |
chr4 | 57929114 | 57929322 | E069 | 12210 |
chr4 | 57929339 | 57929728 | E069 | 12435 |
chr4 | 57929763 | 57929813 | E069 | 12859 |
chr4 | 57929823 | 57929998 | E069 | 12919 |
chr4 | 57930424 | 57930535 | E069 | 13520 |
chr4 | 57930689 | 57930781 | E069 | 13785 |
chr4 | 57936692 | 57937261 | E069 | 19788 |
chr4 | 57948273 | 57948377 | E069 | 31369 |
chr4 | 57927682 | 57927863 | E070 | 10778 |
chr4 | 57904109 | 57904752 | E071 | -12152 |
chr4 | 57914869 | 57915071 | E071 | -1833 |
chr4 | 57915161 | 57915370 | E071 | -1534 |
chr4 | 57929114 | 57929322 | E071 | 12210 |
chr4 | 57929339 | 57929728 | E071 | 12435 |
chr4 | 57930866 | 57932598 | E071 | 13962 |
chr4 | 57936692 | 57937261 | E071 | 19788 |
chr4 | 57937402 | 57937487 | E071 | 20498 |
chr4 | 57937528 | 57937826 | E071 | 20624 |
chr4 | 57940619 | 57941781 | E071 | 23715 |
chr4 | 57944569 | 57945836 | E071 | 27665 |
chr4 | 57945858 | 57946117 | E071 | 28954 |
chr4 | 57946681 | 57946741 | E071 | 29777 |
chr4 | 57946792 | 57946872 | E071 | 29888 |
chr4 | 57946930 | 57948223 | E071 | 30026 |
chr4 | 57948273 | 57948377 | E071 | 31369 |
chr4 | 57948471 | 57948551 | E071 | 31567 |
chr4 | 57921859 | 57922927 | E072 | 4955 |
chr4 | 57923471 | 57923879 | E072 | 6567 |
chr4 | 57942612 | 57942665 | E073 | 25708 |
chr4 | 57944569 | 57945836 | E073 | 27665 |
chr4 | 57946681 | 57946741 | E073 | 29777 |
chr4 | 57946792 | 57946872 | E073 | 29888 |
chr4 | 57946930 | 57948223 | E073 | 30026 |
chr4 | 57956332 | 57956539 | E073 | 39428 |
chr4 | 57957810 | 57958229 | E073 | 40906 |
chr4 | 57921859 | 57922927 | E074 | 4955 |
chr4 | 57940619 | 57941781 | E074 | 23715 |
chr4 | 57946930 | 57948223 | E074 | 30026 |
chr4 | 57956007 | 57956061 | E074 | 39103 |
chr4 | 57956332 | 57956539 | E074 | 39428 |
chr4 | 57921859 | 57922927 | E081 | 4955 |