rs35769988

Homo sapiens
delT
IGFBP7 : Intron Variant
Check p-value
Indel (Insertion and Deletion)
delT=0342 (1714/5008,1000G)
chr4:57050723-57050738 (GRCh38.p7) (4q12)
AD
GWASCatalog
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.57050738delT
GRCh37.p13 chr 4NC_000004.11:g.57916904delT
IGFBP7 RefSeqGeneNG_031877.1:g.64663delA

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322(T)16=0.690delT=0.310
1000GenomesAmericanSub694(T)16=0.710delT=0.290
1000GenomesEast AsianSub1008(T)16=0.555delT=0.445
1000GenomesEuropeSub1006(T)16=0.677delT=0.323
1000GenomesGlobalStudy-wide5008(T)16=0.658delT=0.342
1000GenomesSouth AsianSub978(T)16=0.660delT=0.340
PMID Title Author Journal
29460428Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.Gelernter JAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs357699889E-06alcohol consumption measurement29460428

eQTL of rs35769988 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs35769988 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr45792185957922927E0674955
chr45790881757910887E068-6017
chr45791127357911477E068-5427
chr45791516157915370E068-1534
chr45792185957922927E0684955
chr45792393157924070E0687027
chr45792933957929728E06812435
chr45792976357929813E06812859
chr45792982357929998E06812919
chr45793669257937261E06819788
chr45793740257937487E06820498
chr45793752857937826E06820624
chr45794456957945836E06827665
chr45794585857946117E06828954
chr45794827357948377E06831369
chr45796460757965822E06847703
chr45792185957922927E0694955
chr45792911457929322E06912210
chr45792933957929728E06912435
chr45792976357929813E06912859
chr45792982357929998E06912919
chr45793042457930535E06913520
chr45793068957930781E06913785
chr45793669257937261E06919788
chr45794827357948377E06931369
chr45792768257927863E07010778
chr45790410957904752E071-12152
chr45791486957915071E071-1833
chr45791516157915370E071-1534
chr45792911457929322E07112210
chr45792933957929728E07112435
chr45793086657932598E07113962
chr45793669257937261E07119788
chr45793740257937487E07120498
chr45793752857937826E07120624
chr45794061957941781E07123715
chr45794456957945836E07127665
chr45794585857946117E07128954
chr45794668157946741E07129777
chr45794679257946872E07129888
chr45794693057948223E07130026
chr45794827357948377E07131369
chr45794847157948551E07131567
chr45792185957922927E0724955
chr45792347157923879E0726567
chr45794261257942665E07325708
chr45794456957945836E07327665
chr45794668157946741E07329777
chr45794679257946872E07329888
chr45794693057948223E07330026
chr45795633257956539E07339428
chr45795781057958229E07340906
chr45792185957922927E0744955
chr45794061957941781E07423715
chr45794693057948223E07430026
chr45795600757956061E07439103
chr45795633257956539E07439428
chr45792185957922927E0814955