rs35795311

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0228 (6844/29940,GnomAD)
G=0228 (6641/29118,TOPMED)
G=0166 (831/5008,1000G)
G=0293 (1128/3854,ALSPAC)
G=0291 (1078/3708,TWINSUK)
chr15:38706468 (GRCh38.p7) (15q14)
AD
GWASdb2
1   publication(s)
See rs on genome
7 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.38706468C>G
GRCh37.p13 chr 15NC_000015.9:g.38998669C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.851G=0.149
1000GenomesAmericanSub694C=0.760G=0.240
1000GenomesEast AsianSub1008C=0.970G=0.030
1000GenomesEuropeSub1006C=0.752G=0.248
1000GenomesGlobalStudy-wide5008C=0.834G=0.166
1000GenomesSouth AsianSub978C=0.810G=0.190
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.707G=0.293
The Genome Aggregation DatabaseAfricanSub8712C=0.822G=0.178
The Genome Aggregation DatabaseAmericanSub838C=0.760G=0.240
The Genome Aggregation DatabaseEast AsianSub1616C=0.971G=0.029
The Genome Aggregation DatabaseEuropeSub18474C=0.731G=0.268
The Genome Aggregation DatabaseGlobalStudy-wide29940C=0.771G=0.228
The Genome Aggregation DatabaseOtherSub300C=0.740G=0.260
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.771G=0.228
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.709G=0.291
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs357953116.44E-07alcohol dependence23089632

eQTL of rs35795311 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs35795311 in Fetal Brain

Probe ID Position Gene beta p-value
cg21039679chr15:38989738C15orf53-0.02362836806952721.3452e-12

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr153896065238961725E068-36944
chr153896065238961725E069-36944
chr153896065238961725E070-36944
chr153900002839001434E0811359
chr153900646639007349E0817797
chr153896051838960573E082-38096
chr153896065238961725E082-36944