| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 15 | NC_000015.10:g.38706194G>A |
| GRCh37.p13 chr 15 | NC_000015.9:g.38998395G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.850 | A=0.150 |
| 1000Genomes | American | Sub | 694 | G=0.760 | A=0.240 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.970 | A=0.030 |
| 1000Genomes | Europe | Sub | 1006 | G=0.752 | A=0.248 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.834 | A=0.166 |
| 1000Genomes | South Asian | Sub | 978 | G=0.810 | A=0.190 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.708 | A=0.292 |
| The Genome Aggregation Database | African | Sub | 8700 | G=0.822 | A=0.178 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.760 | A=0.240 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.971 | A=0.029 |
| The Genome Aggregation Database | Europe | Sub | 18446 | G=0.731 | A=0.268 |
| The Genome Aggregation Database | Global | Study-wide | 29902 | G=0.771 | A=0.228 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.750 | A=0.250 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.771 | A=0.228 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.710 | A=0.290 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23089632 | A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53. | Wang JC | Mol Psychiatry |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs36094159 | 6.94E-07 | alcohol dependence | 23089632 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value |
|---|---|---|---|---|
| cg21039679 | chr15:38989738 | C15orf53 | -0.0236283680695272 | 1.3452e-12 |
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr15 | 38960652 | 38961725 | E068 | -36670 |
| chr15 | 38960652 | 38961725 | E069 | -36670 |
| chr15 | 38960652 | 38961725 | E070 | -36670 |
| chr15 | 39000028 | 39001434 | E081 | 1633 |
| chr15 | 39006466 | 39007349 | E081 | 8071 |
| chr15 | 38960518 | 38960573 | E082 | -37822 |
| chr15 | 38960652 | 38961725 | E082 | -36670 |