rs36563

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
T==0170 (5111/29948,GnomAD)
T==0186 (5432/29118,TOPMED)
T==0152 (762/5008,1000G)
T==0150 (580/3854,ALSPAC)
T==0148 (549/3708,TWINSUK)
chr14:70885931 (GRCh38.p7) (14q24.2)
AD
GWASdb2 | GWASCatalog
1   publication(s)
See rs on genome
107 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.70885931T>G
GRCh37.p13 chr 14NC_000014.8:g.71352648T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.244G=0.756
1000GenomesAmericanSub694T=0.100G=0.900
1000GenomesEast AsianSub1008T=0.159G=0.841
1000GenomesEuropeSub1006T=0.170G=0.830
1000GenomesGlobalStudy-wide5008T=0.152G=0.848
1000GenomesSouth AsianSub978T=0.040G=0.960
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.150G=0.850
The Genome Aggregation DatabaseAfricanSub8704T=0.215G=0.785
The Genome Aggregation DatabaseAmericanSub836T=0.120G=0.880
The Genome Aggregation DatabaseEast AsianSub1618T=0.200G=0.800
The Genome Aggregation DatabaseEuropeSub18488T=0.148G=0.851
The Genome Aggregation DatabaseGlobalStudy-wide29948T=0.170G=0.829
The Genome Aggregation DatabaseOtherSub302T=0.230G=0.770
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.186G=0.813
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.148G=0.852
PMID Title Author Journal
19581569Genome-wide association study of alcohol dependence.Treutlein JArch Gen Psychiatry

P-Value

SNP ID p-value Traits Study
rs365635E-06alcohol dependence19581569

eQTL of rs36563 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr14:71352648PCNXENSG00000100731.11T>G1.4254e-12-21474Cerebellum

meQTL of rs36563 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr147137149671372529E06718848
chr147137267271373246E06720024
chr147137694871377708E06724300
chr147139530071395340E06742652
chr147137267271373246E06820024
chr147137326571373330E06820617
chr147137694871377708E06824300
chr147137913271379222E06826484
chr147137929171379380E06826643
chr147138487571384925E06832227
chr147138530471385390E06832656
chr147138549471385574E06832846
chr147138812771388167E06835479
chr147138852071388703E06835872
chr147139307471393542E06840426
chr147139637771396435E06843729
chr147139681071397012E06844162
chr147137267271373246E06920024
chr147137326571373330E06920617
chr147137694871377708E06924300
chr147137929171379380E06926643
chr147137950971379646E06926861
chr147137983771379883E06927189
chr147137991371379953E06927265
chr147138746271387553E06934814
chr147138757271387652E06934924
chr147140109371402190E06948445
chr147137694871377708E07024300
chr147137929171379380E07026643
chr147137983771379883E07027189
chr147137991371379953E07027265
chr147137149671372529E07118848
chr147137326571373330E07120617
chr147137694871377708E07124300
chr147137825771378320E07125609
chr147137834171378405E07125693
chr147137841571378749E07125767
chr147137913271379222E07126484
chr147137929171379380E07126643
chr147138549471385574E07132846
chr147138563671385702E07132988
chr147138591171385951E07133263
chr147138640171386887E07133753
chr147138690271386972E07134254
chr147139267371392937E07140025
chr147139307471393542E07140426
chr147140081171401091E07148163
chr147140109371402190E07148445
chr147137267271373246E07220024
chr147137694871377708E07224300
chr147137913271379222E07226484
chr147137929171379380E07226643
chr147137950971379646E07226861
chr147138591171385951E07233263
chr147139637771396435E07243729
chr147139681071397012E07244162
chr147139702071397136E07244372
chr147139724971397309E07244601
chr147139738271397466E07244734
chr147137267271373246E07320024
chr147137694871377708E07324300
chr147138549471385574E07332846
chr147138563671385702E07332988
chr147138591171385951E07333263
chr147138640171386887E07333753
chr147139307471393542E07340426
chr147137267271373246E07420024
chr147137326571373330E07420617
chr147137694871377708E07424300
chr147137786471377992E07425216
chr147137841571378749E07425767
chr147137950971379646E07426861
chr147137983771379883E07427189
chr147137991371379953E07427265
chr147138591171385951E07433263
chr147138690271386972E07434254
chr147138713771387177E07434489
chr147138746271387553E07434814
chr147138757271387652E07434924
chr147139267371392937E07440025
chr147139307471393542E07440426
chr147139681071397012E07444162
chr147139702071397136E07444372
chr147131496971315025E081-37623
chr147134579471345857E081-6791
chr147134619671346256E081-6392
chr147134633171346430E081-6218
chr147136363971364628E08110991
chr147136500671365069E08112358
chr147136525371365311E08112605
chr147136533371365469E08112685
chr147137326571373330E08120617
chr147137694871377708E08124300
chr147137786471377992E08125216
chr147138640171386887E08133753
chr147138690271386972E08134254
chr147139267371392937E08140025
chr147139307471393542E08140426
chr147131406971314824E082-37824
chr147135498771355084E0822339
chr147137786471377992E08225216
chr147137929171379380E08226643
chr147137983771379883E08227189
chr147137991371379953E08227265
chr147139307471393542E08240426
chr147139702071397136E08244372
chr147139785971398195E08245211










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr147137342071376182E06720772
chr147137342071376182E06820772
chr147137342071376182E06920772
chr147137342071376182E07020772
chr147137342071376182E07120772
chr147137342071376182E07220772
chr147137342071376182E07320772
chr147137342071376182E07420772
chr147137342071376182E08120772
chr147137342071376182E08220772