SNP Detail Info-rs366533

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

OR51B5 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0461 (13432/29118,TOPMED)
G==0396 (11166/28136,GnomAD)
G==0444 (2222/5008,1000G)
G==0326 (1256/3854,ALSPAC)
G==0343 (1272/3708,TWINSUK)

Position: chr11:5496255 (GRCh38.p7) (11p15.4)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.5496255G>A
GRCh37.p13 chr 11	NC_000011.9:g.5517485G>A

Molecule type	Change	Amino acid[Codon]	SO Term
OR51B5 transcript variant 1	NM_001005567.2:c.	N/A	Intron Variant
OR51B5 transcript variant 2	NR_038321.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.676	A=0.324
1000Genomes	American	Sub	694	G=0.390	A=0.610
1000Genomes	East Asian	Sub	1008	G=0.311	A=0.689
1000Genomes	Europe	Sub	1006	G=0.378	A=0.622
1000Genomes	Global	Study-wide	5008	G=0.444	A=0.556
1000Genomes	South Asian	Sub	978	G=0.370	A=0.630
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.326	A=0.674
The Genome Aggregation Database	African	Sub	7730	G=0.566	A=0.434
The Genome Aggregation Database	American	Sub	812	G=0.400	A=0.600
The Genome Aggregation Database	East Asian	Sub	1552	G=0.267	A=0.733
The Genome Aggregation Database	Europe	Sub	17746	G=0.334	A=0.665
The Genome Aggregation Database	Global	Study-wide	28136	G=0.396	A=0.603
The Genome Aggregation Database	Other	Sub	296	G=0.380	A=0.620
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.461	A=0.538
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.343	A=0.657

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs366533	9.05E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs366533