| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 6 | NC_000006.12:g.52937446A>G |
| GRCh37.p13 chr 6 | NC_000006.11:g.52802244A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.970 | G=0.030 |
| 1000Genomes | American | Sub | 694 | A=0.830 | G=0.170 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.959 | G=0.041 |
| 1000Genomes | Europe | Sub | 1006 | A=0.724 | G=0.276 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.880 | G=0.120 |
| 1000Genomes | South Asian | Sub | 978 | A=0.870 | G=0.130 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.735 | G=0.265 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.835 | G=0.164 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.732 | G=0.268 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs371403 | 0.000778 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr6 | 52802162 | 52802252 | E070 | 0 |
| chr6 | 52758563 | 52758844 | E071 | -43400 |
| chr6 | 52841114 | 52841240 | E071 | 38870 |
| chr6 | 52757519 | 52757904 | E074 | -44340 |
| chr6 | 52757984 | 52758450 | E074 | -43794 |
| chr6 | 52758563 | 52758844 | E074 | -43400 |