SNP Detail Info-rs371403

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0179 (5383/29934,GnomAD)
G=0164 (4797/29118,TOPMED)
G=0120 (603/5008,1000G)
G=0265 (1020/3854,ALSPAC)
G=0268 (994/3708,TWINSUK)

Position: chr6:52937446 (GRCh38.p7) (6p12.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.52937446A>G
GRCh37.p13 chr 6	NC_000006.11:g.52802244A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.970	G=0.030
1000Genomes	American	Sub	694	A=0.830	G=0.170
1000Genomes	East Asian	Sub	1008	A=0.959	G=0.041
1000Genomes	Europe	Sub	1006	A=0.724	G=0.276
1000Genomes	Global	Study-wide	5008	A=0.880	G=0.120
1000Genomes	South Asian	Sub	978	A=0.870	G=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.735	G=0.265
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.835	G=0.164
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.732	G=0.268

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs371403	0.000778	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	52802162	52802252	E070	0
chr6	52758563	52758844	E071	-43400
chr6	52841114	52841240	E071	38870
chr6	52757519	52757904	E074	-44340
chr6	52757984	52758450	E074	-43794
chr6	52758563	52758844	E074	-43400

rs371403