SNP Detail Info-rs3743307

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.94341751G>A
GRCh37.p13 chr 15	NC_000015.9:g.94884980G>A

Molecule type	Change	Amino acid[Codon]	SO Term
MCTP2 transcript variant 2	NM_001159643.1:c.	N/A	Intron Variant
MCTP2 transcript variant 1	NM_018349.3:c.	N/A	Intron Variant
MCTP2 transcript variant 3	NM_001159644.1:c.	N/A	Genic Upstream Transcript Variant
MCTP2 transcript variant X4	XM_005254955.3:c.	N/A	Intron Variant
MCTP2 transcript variant X5	XM_006720603.2:c.	N/A	Intron Variant
MCTP2 transcript variant X3	XM_011521770.1:c.	N/A	Intron Variant
MCTP2 transcript variant X6	XM_011521771.2:c.	N/A	Intron Variant
MCTP2 transcript variant X7	XM_011521772.2:c.	N/A	Intron Variant
MCTP2 transcript variant X8	XM_011521773.2:c.	N/A	Intron Variant
MCTP2 transcript variant X11	XM_011521774.2:c.	N/A	Intron Variant
MCTP2 transcript variant X1	XM_017022403.1:c.	N/A	Intron Variant
MCTP2 transcript variant X9	XM_017022404.1:c.	N/A	Intron Variant
MCTP2 transcript variant X10	XM_017022405.1:c.	N/A	Intron Variant
MCTP2 transcript variant X15	XM_005254960.2:c.	N/A	Genic Upstream Transcript Variant
MCTP2 transcript variant X14	XM_011521775.2:c.	N/A	Genic Upstream Transcript Variant
MCTP2 transcript variant X12	XR_001751349.1:n.	N/A	Intron Variant
MCTP2 transcript variant X2	XR_931865.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.603	A=0.397
1000Genomes	American	Sub	694	G=0.810	A=0.190
1000Genomes	East Asian	Sub	1008	G=0.962	A=0.038
1000Genomes	Europe	Sub	1006	G=0.773	A=0.227
1000Genomes	Global	Study-wide	5008	G=0.781	A=0.219
1000Genomes	South Asian	Sub	978	G=0.830	A=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.805	A=0.195
The Genome Aggregation Database	African	Sub	8702	G=0.634	A=0.366
The Genome Aggregation Database	American	Sub	838	G=0.820	A=0.180
The Genome Aggregation Database	East Asian	Sub	1618	G=0.964	A=0.036
The Genome Aggregation Database	Europe	Sub	18462	G=0.769	A=0.230
The Genome Aggregation Database	Global	Study-wide	29922	G=0.742	A=0.258
The Genome Aggregation Database	Other	Sub	302	G=0.800	A=0.200
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.732	A=0.267
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.807	A=0.193

PMID	Title	Author	Journal
24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Quillen EE	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs3743307	0.000428	alcohol dependence	24277619

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	94909453	94909569	E070	24473
chr15	94910092	94910315	E070	25112
chr15	94910543	94910603	E070	25563
chr15	94910737	94910827	E070	25757
chr15	94910849	94911548	E070	25869
chr15	94911954	94912004	E070	26974
chr15	94912086	94912255	E070	27106
chr15	94912621	94912676	E070	27641
chr15	94912691	94912751	E070	27711
chr15	94912854	94912935	E070	27874
chr15	94913241	94913384	E070	28261
chr15	94913457	94914101	E070	28477
chr15	94914251	94914441	E070	29271
chr15	94914724	94914774	E070	29744
chr15	94914910	94914951	E070	29930
chr15	94867183	94867882	E072	-17098
chr15	94910092	94910315	E081	25112
chr15	94910543	94910603	E081	25563
chr15	94910737	94910827	E081	25757
chr15	94913457	94914101	E081	28477
chr15	94857165	94857385	E082	-27595
chr15	94910092	94910315	E082	25112
chr15	94910543	94910603	E082	25563
chr15	94910737	94910827	E082	25757
chr15	94910849	94911548	E082	25869

rs3743307