SNP Detail Info-rs3745376

Molecule type	Change	Amino acid[Codon]	SO Term
CLEC4M transcript variant 2	NM_001144904.1:c.	N/A	Intron Variant
CLEC4M transcript variant 12	NM_001144905.1:c.	N/A	Intron Variant
CLEC4M transcript variant 7	NM_001144906.1:c.	N/A	Intron Variant
CLEC4M transcript variant 11	NM_001144907.1:c.	N/A	Intron Variant
CLEC4M transcript variant 10	NM_001144908.1:c.	N/A	Intron Variant
CLEC4M transcript variant 9	NM_001144909.1:c.	N/A	Intron Variant
CLEC4M transcript variant 8	NM_001144910.1:c.	N/A	Intron Variant
CLEC4M transcript variant 3	NM_001144911.1:c.	N/A	Intron Variant
CLEC4M transcript variant 1	NM_014257.4:c.	N/A	Intron Variant
CLEC4M transcript variant 4	NR_026707.1:n.	N/A	Intron Variant
CLEC4M transcript variant 5	NR_026708.1:n.	N/A	Intron Variant
CLEC4M transcript variant 6	NR_026709.1:n.	N/A	Intron Variant
CLEC4M transcript variant X3	XM_006722611.2:c.	N/A	Intron Variant
CLEC4M transcript variant X4	XM_006722612.3:c.	N/A	Intron Variant
CLEC4M transcript variant X5	XM_006722613.3:c.	N/A	Intron Variant
CLEC4M transcript variant X6	XM_006722614.3:c.	N/A	Intron Variant
CLEC4M transcript variant X7	XM_006722615.2:c.	N/A	Intron Variant
CLEC4M transcript variant X8	XR_001753583.1:n.	N/A	Intron Variant
CLEC4M transcript variant X9	XR_001753584.1:n.	N/A	Intron Variant
CLEC4M transcript variant X1	XR_430125.2:n.	N/A	Intron Variant
CLEC4M transcript variant X2	XR_936147.2:n.	N/A	Intron Variant

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105372263 transcript variant X1	XR_001753855.1:n.	N/A	Upstream Transcript Variant
LOC105372263 transcript variant X2	XR_001753856.1:n.	N/A	Upstream Transcript Variant
LOC105372263 transcript variant X4	XR_001753858.1:n.	N/A	Upstream Transcript Variant
LOC105372263 transcript variant X3	XR_001753857.1:n.	N/A	N/A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.852	T=0.148
1000Genomes	American	Sub	694	G=0.900	T=0.100
1000Genomes	East Asian	Sub	1008	G=0.829	T=0.171
1000Genomes	Europe	Sub	1006	G=0.841	T=0.159
1000Genomes	Global	Study-wide	5008	G=0.873	T=0.127
1000Genomes	South Asian	Sub	978	G=0.960	T=0.040
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.839	T=0.161
The Exome Aggregation Consortium	American	Sub	21950	G=0.899	T=0.100
The Exome Aggregation Consortium	Asian	Sub	24146	G=0.910	T=0.089
The Exome Aggregation Consortium	Europe	Sub	72914	G=0.838	T=0.161
The Exome Aggregation Consortium	Global	Study-wide	119908	G=0.864	T=0.135
The Exome Aggregation Consortium	Other	Sub	898	G=0.870	T=0.130
The Genome Aggregation Database	African	Sub	8700	G=0.866	T=0.134
The Genome Aggregation Database	American	Sub	836	G=0.890	T=0.110
The Genome Aggregation Database	East Asian	Sub	1620	G=0.840	T=0.160
The Genome Aggregation Database	Europe	Sub	18462	G=0.837	T=0.162
The Genome Aggregation Database	Global	Study-wide	29920	G=0.848	T=0.151
The Genome Aggregation Database	Other	Sub	302	G=0.880	T=0.120
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.863	T=0.136
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.831	T=0.169

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs3745376	0.000506	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr19	7812794	7812848	E071	-20842
chr19	7812849	7812959	E071	-20731

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr19	7852721	7852847	E067	19031
chr19	7852721	7852847	E068	19031
chr19	7864071	7865401	E068	30381
chr19	7852721	7852847	E069	19031
chr19	7853363	7853794	E069	19673
chr19	7853363	7853794	E070	19673
chr19	7864071	7865401	E071	30381
chr19	7852721	7852847	E072	19031
chr19	7853363	7853794	E072	19673
chr19	7852721	7852847	E073	19031
chr19	7853363	7853794	E073	19673
chr19	7852721	7852847	E082	19031
chr19	7853363	7853794	E082	19673

rs3745376