rs3762714

Homo sapiens
G>A
VPRBP : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0139 (695/5008,1000G)
chr3:51483637 (GRCh38.p7) (3p21.2)
AD
GWASdb2
1   publication(s)
See rs on genome
101 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.51483637G>A
GRCh37.p13 chr 3 fix patch HG186_PATCHNW_003315910.1:g.104960G>A
GRCh37.p13 chr 3NC_000003.11:g.51517653G>A

Gene: VPRBP, Vpr (HIV-1) binding protein(minus strand)

Molecule type Change Amino acid[Codon] SO Term
DCAF1 transcript variant 2NM_001171904.1:c.N/AIntron Variant
DCAF1 transcript variant 1NM_014703.2:c.N/AIntron Variant
VPRBP transcript variant X10XM_005276753.4:c.N/AIntron Variant
VPRBP transcript variant X9XM_005276755.4:c.N/AIntron Variant
VPRBP transcript variant X3XM_011534273.2:c.N/AIntron Variant
VPRBP transcript variant X2XM_011534274.2:c.N/AIntron Variant
VPRBP transcript variant X7XM_011534275.2:c.N/AIntron Variant
VPRBP transcript variant X6XM_011534276.2:c.N/AIntron Variant
VPRBP transcript variant X1XM_011534277.2:c.N/AIntron Variant
VPRBP transcript variant X4XM_017007546.1:c.N/AIntron Variant
VPRBP transcript variant X5XM_017007547.1:c.N/AIntron Variant
VPRBP transcript variant X8XM_017007548.1:c.N/AIntron Variant
VPRBP transcript variant X11XM_017007549.1:c.N/AIntron Variant
VPRBP transcript variant X12XM_017007550.1:c.N/AIntron Variant
VPRBP transcript variant X16XM_017007551.1:c.N/AIntron Variant
VPRBP transcript variant X13XR_001740385.1:n.N/AIntron Variant
VPRBP transcript variant X14XR_001740386.1:n.N/AIntron Variant
VPRBP transcript variant X15XR_001740387.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.884A=0.116
1000GenomesAmericanSub694G=0.780A=0.220
1000GenomesEast AsianSub1008G=0.676A=0.324
1000GenomesEuropeSub1006G=0.980A=0.020
1000GenomesGlobalStudy-wide5008G=0.861A=0.139
1000GenomesSouth AsianSub978G=0.960A=0.040
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs37627140.00014alcohol dependence20201924

eQTL of rs3762714 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3762714 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3104810105451E0670
chr3114174114280E0679214
chr3114437114799E0679477
chr3141018141128E06736058
chr3114174114280E0689214
chr3114437114799E0689477
chr3114802115003E0689842
chr3115137115254E06810177
chr3115361115440E06810401
chr3139390139586E06834430
chr3139704139834E06834744
chr3141018141128E06836058
chr3141277141526E06836317
chr3104810105451E0690
chr3105525105633E069565
chr3114174114280E0699214
chr3114437114799E0699477
chr3114802115003E0699842
chr3115137115254E06910177
chr3115361115440E06910401
chr3141018141128E06936058
chr3114174114280E0709214
chr3114437114799E0709477
chr3114802115003E0709842
chr3115137115254E07010177
chr3115361115440E07010401
chr3116283116363E07011323
chr3116414116901E07011454
chr3117032117204E07012072
chr3117319117416E07012359
chr3117466117544E07012506
chr3123630123786E07018670
chr3123847123912E07018887
chr3124839125153E07019879
chr3139183139333E07034223
chr3139390139586E07034430
chr3139704139834E07034744
chr3142138142206E07037178
chr3144310144411E07039350
chr3145812145986E07040852
chr3152159152209E07047199
chr3152592152664E07047632
chr3152974153132E07048014
chr3153343153416E07048383
chr3104810105451E0710
chr3105525105633E071565
chr3114174114280E0719214
chr3114437114799E0719477
chr3114802115003E0719842
chr3115137115254E07110177
chr3141018141128E07136058
chr3141277141526E07136317
chr3105525105633E072565
chr3114174114280E0729214
chr3114437114799E0729477
chr3114802115003E0729842
chr3115137115254E07210177
chr3115361115440E07210401
chr3141018141128E07236058
chr3141018141128E07336058
chr3141277141526E07336317
chr3142138142206E07337178
chr3111467111643E0746507
chr3114437114799E0749477
chr3114802115003E0749842
chr3115137115254E07410177
chr3115361115440E07410401
chr3141018141128E07436058
chr3141277141526E07436317
chr38431584369E081-20591
chr38610586168E081-18792
chr3104810105451E0810
chr3105525105633E081565
chr3114437114799E0819477
chr3114802115003E0819842
chr3115137115254E08110177
chr3115361115440E08110401
chr3123630123786E08118670
chr3139183139333E08134223
chr3139390139586E08134430
chr3139704139834E08134744
chr3141018141128E08136058
chr3141277141526E08136317
chr38431584369E082-20591
chr3104810105451E0820
chr3105525105633E082565
chr3114437114799E0829477
chr3114802115003E0829842
chr3115137115254E08210177
chr3115361115440E08210401
chr3117032117204E08212072
chr3117319117416E08212359
chr3117466117544E08212506
chr3139183139333E08234223
chr3139390139586E08234430
chr3139704139834E08234744
chr3141018141128E08236058
chr3141277141526E08236317
chr3142138142206E08237178
chr3152974153132E08248014
chr3153343153416E08248383