rs3786949

Homo sapiens
G>A
GMFG : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0131 (3924/29846,GnomAD)
A=0175 (5111/29118,TOPMED)
A=0140 (701/5008,1000G)
A=0071 (275/3854,ALSPAC)
A=0061 (226/3708,TWINSUK)
chr19:39335839 (GRCh38.p7) (19q13.2)
AD
GWASdb2
2   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 19NC_000019.10:g.39335839G>A
GRCh37.p13 chr 19NC_000019.9:g.39826479G>A

Gene: GMFG, glia maturation factor gamma(minus strand)

Molecule type Change Amino acid[Codon] SO Term
GMFG transcript variant 2NM_001301008.1:c.N/AIntron Variant
GMFG transcript variant 1NM_004877.3:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.654A=0.346
1000GenomesAmericanSub694G=0.930A=0.070
1000GenomesEast AsianSub1008G=0.933A=0.067
1000GenomesEuropeSub1006G=0.929A=0.071
1000GenomesGlobalStudy-wide5008G=0.860A=0.140
1000GenomesSouth AsianSub978G=0.940A=0.060
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.929A=0.071
The Genome Aggregation DatabaseAfricanSub8646G=0.715A=0.285
The Genome Aggregation DatabaseAmericanSub836G=0.940A=0.060
The Genome Aggregation DatabaseEast AsianSub1616G=0.940A=0.060
The Genome Aggregation DatabaseEuropeSub18446G=0.930A=0.069
The Genome Aggregation DatabaseGlobalStudy-wide29846G=0.868A=0.131
The Genome Aggregation DatabaseOtherSub302G=0.900A=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.824A=0.175
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.939A=0.061
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry
26962152Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.Offenbacher SHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs37869492.5E-05alcoholism (heaviness of drinking)21529783

eQTL of rs3786949 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3786949 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr193980937339809469E067-17010
chr193980961939809784E067-16695
chr193981206639812206E067-14273
chr193983465039834698E0678171
chr193983475239835190E0678273
chr193983534039835408E0678861
chr193983562439835685E0679145
chr193983570639835773E0679227
chr193983593339835986E0679454
chr193983599939836053E0679520
chr193983611439836210E0679635
chr193983626039836312E0679781
chr193983632239836467E0679843
chr193983654039836698E06710061
chr193983670239836855E06710223
chr193983693239836996E06710453
chr193983704439837091E06710565
chr193983718939837265E06710710
chr193983745539837515E06710976
chr193983807639838305E06711597
chr193983857839838726E06712099
chr193983931839839411E06712839
chr193983971639839756E06713237
chr193983983739839887E06713358
chr193984023739840320E06713758
chr193984038039840420E06713901
chr193984195339842033E06715474
chr193984205239842669E06715573
chr193984269739842962E06716218
chr193984357839843871E06717099
chr193984597439846052E06719495
chr193984614839846205E06719669
chr193984629339846343E06719814
chr193984646039846563E06719981
chr193984683839847071E06720359
chr193984713639847180E06720657
chr193984732139847433E06720842
chr193984751139847565E06721032
chr193984774439847816E06721265
chr193984787939847933E06721400
chr193984806139848111E06721582
chr193984817239848298E06721693
chr193984856139848611E06722082
chr193984942939849479E06722950
chr193984986039849921E06723381
chr193985125639851328E06724777
chr193985137439851497E06724895
chr193985156839851772E06725089
chr193985260839852672E06726129
chr193985270139852785E06726222
chr193985287439852937E06726395
chr193985299939855151E06726520
chr193985524039855365E06728761
chr193985636239856457E06729883
chr193985786839857982E06731389
chr193985917139859254E06732692
chr193985929439859385E06732815
chr193986023739860344E06733758
chr193986042939860479E06733950
chr193986073139860857E06734252
chr193986278339862900E06736304
chr193986290139863628E06736422
chr193986368339863882E06737204
chr193986411139864249E06737632
chr193981206639812206E068-14273
chr193983465039834698E0688171
chr193983475239835190E0688273
chr193983534039835408E0688861
chr193983562439835685E0689145
chr193983570639835773E0689227
chr193983593339835986E0689454
chr193983599939836053E0689520
chr193983611439836210E0689635
chr193983626039836312E0689781
chr193983632239836467E0689843
chr193983654039836698E06810061
chr193983670239836855E06810223
chr193983693239836996E06810453
chr193983931839839411E06812839
chr193983971639839756E06813237
chr193984195339842033E06815474
chr193984205239842669E06815573
chr193984269739842962E06816218
chr193984323039843426E06816751
chr193984357839843871E06817099
chr193984597439846052E06819495
chr193984614839846205E06819669
chr193984629339846343E06819814
chr193984646039846563E06819981
chr193984942939849479E06822950
chr193984986039849921E06823381
chr193985260839852672E06826129
chr193985270139852785E06826222
chr193985287439852937E06826395
chr193985299939855151E06826520
chr193985524039855365E06828761
chr193985636239856457E06829883
chr193985651239856577E06830033
chr193985659739856676E06830118
chr193986278339862900E06836304
chr193986290139863628E06836422
chr193986368339863882E06837204
chr193983465039834698E0698171
chr193983475239835190E0698273
chr193983534039835408E0698861
chr193983562439835685E0699145
chr193983570639835773E0699227
chr193983593339835986E0699454
chr193983599939836053E0699520
chr193983611439836210E0699635
chr193983626039836312E0699781
chr193983632239836467E0699843
chr193983654039836698E06910061
chr193983670239836855E06910223
chr193983693239836996E06910453
chr193983704439837091E06910565
chr193983718939837265E06910710
chr193983745539837515E06910976
chr193983807639838305E06911597
chr193983857839838726E06912099
chr193983881339838889E06912334
chr193983912139839197E06912642
chr193983931839839411E06912839
chr193983971639839756E06913237
chr193983983739839887E06913358
chr193984023739840320E06913758
chr193984038039840420E06913901
chr193984083439840886E06914355
chr193984094239841074E06914463
chr193984146739841530E06914988
chr193984195339842033E06915474
chr193984205239842669E06915573
chr193984269739842962E06916218
chr193984323039843426E06916751
chr193984357839843871E06917099
chr193984597439846052E06919495
chr193984614839846205E06919669
chr193984629339846343E06919814
chr193984646039846563E06919981
chr193984683839847071E06920359
chr193984713639847180E06920657
chr193984732139847433E06920842
chr193984751139847565E06921032
chr193984774439847816E06921265
chr193984787939847933E06921400
chr193984806139848111E06921582
chr193984817239848298E06921693
chr193984856139848611E06922082
chr193984942939849479E06922950
chr193984986039849921E06923381
chr193985023439850294E06923755
chr193985031839850368E06923839
chr193985039339850450E06923914
chr193985260839852672E06926129
chr193985270139852785E06926222
chr193985287439852937E06926395
chr193985299939855151E06926520
chr193985524039855365E06928761
chr193985636239856457E06929883
chr193985651239856577E06930033
chr193985659739856676E06930118
chr193985699539857052E06930516
chr193985710339857223E06930624
chr193985730839857444E06930829
chr193985752739857631E06931048
chr193985770239857755E06931223
chr193985775639857838E06931277
chr193985786839857982E06931389
chr193985798639858100E06931507
chr193985917139859254E06932692
chr193985929439859385E06932815
chr193986189839862019E06935419
chr193986235639862427E06935877
chr193986278339862900E06936304
chr193986290139863628E06936422
chr193986368339863882E06937204
chr193986411139864249E06937632
chr193987057239870983E06944093
chr193980994439810002E070-16477
chr193981001639810070E070-16409
chr193983132439831371E0704845
chr193983465039834698E0708171
chr193983475239835190E0708273
chr193983534039835408E0708861
chr193983562439835685E0709145
chr193983570639835773E0709227
chr193983593339835986E0709454
chr193983599939836053E0709520
chr193983611439836210E0709635
chr193983626039836312E0709781
chr193983632239836467E0709843
chr193983654039836698E07010061
chr193983670239836855E07010223
chr193983693239836996E07010453
chr193980994439810002E071-16477
chr193981001639810070E071-16409
chr193983475239835190E0718273
chr193983534039835408E0718861
chr193983562439835685E0719145
chr193983570639835773E0719227
chr193983593339835986E0719454
chr193983599939836053E0719520
chr193983611439836210E0719635
chr193983626039836312E0719781
chr193983632239836467E0719843
chr193983654039836698E07110061
chr193983670239836855E07110223
chr193983693239836996E07110453
chr193983704439837091E07110565
chr193983718939837265E07110710
chr193983745539837515E07110976
chr193983807639838305E07111597
chr193983857839838726E07112099
chr193983881339838889E07112334
chr193983912139839197E07112642
chr193983931839839411E07112839
chr193983971639839756E07113237
chr193983983739839887E07113358
chr193984023739840320E07113758
chr193984038039840420E07113901
chr193984083439840886E07114355
chr193984094239841074E07114463
chr193984146739841530E07114988
chr193984195339842033E07115474
chr193984205239842669E07115573
chr193984323039843426E07116751
chr193984357839843871E07117099
chr193984597439846052E07119495
chr193984614839846205E07119669
chr193984629339846343E07119814
chr193984646039846563E07119981
chr193984683839847071E07120359
chr193984713639847180E07120657
chr193984732139847433E07120842
chr193984751139847565E07121032
chr193984774439847816E07121265
chr193984787939847933E07121400
chr193984806139848111E07121582
chr193984817239848298E07121693
chr193984856139848611E07122082
chr193984942939849479E07122950
chr193984986039849921E07123381
chr193985023439850294E07123755
chr193985031839850368E07123839
chr193985039339850450E07123914
chr193985090339851027E07124424
chr193985108439851176E07124605
chr193985125639851328E07124777
chr193985137439851497E07124895
chr193985156839851772E07125089
chr193985260839852672E07126129
chr193985270139852785E07126222
chr193985287439852937E07126395
chr193985299939855151E07126520
chr193985636239856457E07129883
chr193985651239856577E07130033
chr193985659739856676E07130118
chr193985699539857052E07130516
chr193985710339857223E07130624
chr193985730839857444E07130829
chr193985752739857631E07131048
chr193985770239857755E07131223
chr193985775639857838E07131277
chr193985786839857982E07131389
chr193985798639858100E07131507
chr193985917139859254E07132692
chr193985929439859385E07132815
chr193986235639862427E07135877
chr193986278339862900E07136304
chr193986290139863628E07136422
chr193986368339863882E07137204
chr193986411139864249E07137632
chr193986429239864349E07137813
chr193987014339870193E07143664
chr193987057239870983E07144093
chr193987104039871154E07144561
chr193980937339809469E072-17010
chr193980961939809784E072-16695
chr193983465039834698E0728171
chr193983475239835190E0728273
chr193983534039835408E0728861
chr193983562439835685E0729145
chr193983570639835773E0729227
chr193983593339835986E0729454
chr193983599939836053E0729520
chr193983611439836210E0729635
chr193983626039836312E0729781
chr193983632239836467E0729843
chr193983654039836698E07210061
chr193983670239836855E07210223
chr193983693239836996E07210453
chr193983704439837091E07210565
chr193983718939837265E07210710
chr193983745539837515E07210976
chr193983807639838305E07211597
chr193983857839838726E07212099
chr193983881339838889E07212334
chr193983912139839197E07212642
chr193983931839839411E07212839
chr193983971639839756E07213237
chr193983983739839887E07213358
chr193984023739840320E07213758
chr193984038039840420E07213901
chr193984083439840886E07214355
chr193984094239841074E07214463
chr193984146739841530E07214988
chr193984195339842033E07215474
chr193984205239842669E07215573
chr193984269739842962E07216218
chr193984323039843426E07216751
chr193984357839843871E07217099
chr193984532639845397E07218847
chr193984597439846052E07219495
chr193984614839846205E07219669
chr193984629339846343E07219814
chr193984646039846563E07219981
chr193984942939849479E07222950
chr193984986039849921E07223381
chr193985137439851497E07224895
chr193985156839851772E07225089
chr193985193839851991E07225459
chr193985260839852672E07226129
chr193985270139852785E07226222
chr193985287439852937E07226395
chr193985299939855151E07226520
chr193985524039855365E07228761
chr193985636239856457E07229883
chr193985651239856577E07230033
chr193985659739856676E07230118
chr193985699539857052E07230516
chr193985710339857223E07230624
chr193985730839857444E07230829
chr193985917139859254E07232692
chr193985929439859385E07232815
chr193986278339862900E07236304
chr193986290139863628E07236422
chr193986368339863882E07237204
chr193986411139864249E07237632
chr193980043539800516E073-25963
chr193981206639812206E073-14273
chr193983465039834698E0738171
chr193983475239835190E0738273
chr193983534039835408E0738861
chr193983562439835685E0739145
chr193983570639835773E0739227
chr193983593339835986E0739454
chr193983599939836053E0739520
chr193983611439836210E0739635
chr193983626039836312E0739781
chr193983632239836467E0739843
chr193983654039836698E07310061
chr193983670239836855E07310223
chr193983693239836996E07310453
chr193983704439837091E07310565
chr193983718939837265E07310710
chr193983745539837515E07310976
chr193983807639838305E07311597
chr193983857839838726E07312099
chr193983881339838889E07312334
chr193983912139839197E07312642
chr193983931839839411E07312839
chr193983971639839756E07313237
chr193983983739839887E07313358
chr193984023739840320E07313758
chr193984038039840420E07313901
chr193984195339842033E07315474
chr193984205239842669E07315573
chr193984269739842962E07316218
chr193984323039843426E07316751
chr193984646039846563E07319981
chr193984683839847071E07320359
chr193984713639847180E07320657
chr193984732139847433E07320842
chr193984751139847565E07321032
chr193984942939849479E07322950
chr193985125639851328E07324777
chr193985137439851497E07324895
chr193985156839851772E07325089
chr193985260839852672E07326129
chr193985270139852785E07326222
chr193985287439852937E07326395
chr193985299939855151E07326520
chr193985524039855365E07328761
chr193986278339862900E07336304
chr193986290139863628E07336422
chr193986368339863882E07337204
chr193986411139864249E07337632
chr193987057239870983E07344093
chr193981845539819269E074-7210
chr193983465039834698E0748171
chr193983475239835190E0748273
chr193983534039835408E0748861
chr193983562439835685E0749145
chr193983570639835773E0749227
chr193983593339835986E0749454
chr193983599939836053E0749520
chr193983611439836210E0749635
chr193983626039836312E0749781
chr193983632239836467E0749843
chr193983654039836698E07410061
chr193983670239836855E07410223
chr193983693239836996E07410453
chr193983704439837091E07410565
chr193983718939837265E07410710
chr193983745539837515E07410976
chr193983807639838305E07411597
chr193983912139839197E07412642
chr193983931839839411E07412839
chr193983971639839756E07413237
chr193983983739839887E07413358
chr193984023739840320E07413758
chr193984038039840420E07413901
chr193984083439840886E07414355
chr193984094239841074E07414463
chr193984195339842033E07415474
chr193984205239842669E07415573
chr193984269739842962E07416218
chr193984323039843426E07416751
chr193984357839843871E07417099
chr193984532639845397E07418847
chr193984597439846052E07419495
chr193984614839846205E07419669
chr193984629339846343E07419814
chr193984646039846563E07419981
chr193984683839847071E07420359
chr193984942939849479E07422950
chr193984986039849921E07423381
chr193985023439850294E07423755
chr193985031839850368E07423839
chr193985039339850450E07423914
chr193985137439851497E07424895
chr193985156839851772E07425089
chr193985193839851991E07425459
chr193985260839852672E07426129
chr193985270139852785E07426222
chr193985287439852937E07426395
chr193985299939855151E07426520
chr193985524039855365E07428761
chr193985636239856457E07429883
chr193985651239856577E07430033
chr193985659739856676E07430118
chr193985710339857223E07430624
chr193985730839857444E07430829
chr193985752739857631E07431048
chr193985770239857755E07431223
chr193985775639857838E07431277
chr193985786839857982E07431389
chr193985798639858100E07431507
chr193985917139859254E07432692
chr193985929439859385E07432815
chr193986278339862900E07436304
chr193986290139863628E07436422
chr193986368339863882E07437204
chr193986411139864249E07437632
chr193986429239864349E07437813
chr193980878739808842E081-17637
chr193980919539809235E081-17244
chr193980937339809469E081-17010
chr193980988839809940E081-16539
chr193981014439810234E081-16245
chr193981812739818388E081-8091
chr193983465039834698E0818171
chr193983611439836210E0819635
chr193983626039836312E0819781
chr193983632239836467E0819843
chr193983654039836698E08110061
chr193983670239836855E08110223
chr193983693239836996E08110453
chr193983704439837091E08110565
chr193983718939837265E08110710
chr193979970539799784E082-26695
chr193980919539809235E082-17244
chr193980937339809469E082-17010
chr193980961939809784E082-16695
chr193981223939812468E082-14011
chr193983132439831371E0824845
chr193983465039834698E0828171
chr193983611439836210E0829635
chr193983626039836312E0829781
chr193983632239836467E0829843










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr193980115339801618E067-24861
chr193980165339801947E067-24532
chr193981063039811745E067-14734
chr193981178739811993E067-14486
chr193982582539826558E0670
chr193983149339834574E0675014
chr193980115339801618E068-24861
chr193980165339801947E068-24532
chr193981063039811745E068-14734
chr193981178739811993E068-14486
chr193982582539826558E0680
chr193983149339834574E0685014
chr193980115339801618E069-24861
chr193980165339801947E069-24532
chr193981063039811745E069-14734
chr193981178739811993E069-14486
chr193982582539826558E0690
chr193983149339834574E0695014
chr193981063039811745E070-14734
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chr193983149339834574E0825014