rs3788007

Homo sapiens
G>A
ABCG1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0183 (5489/29954,GnomAD)
A=0184 (5359/29116,TOPMED)
A=0179 (898/5008,1000G)
A=0175 (675/3854,ALSPAC)
A=0183 (680/3708,TWINSUK)
chr21:42286666 (GRCh38.p7) (21q22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 21NC_000021.9:g.42286666G>A
GRCh37.p13 chr 21NC_000021.8:g.43706776G>A

Gene: ABCG1, ATP binding cassette subfamily G member 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ABCG1 transcript variant 4NM_004915.3:c.N/AIntron Variant
ABCG1 transcript variant 2NM_016818.2:c.N/AIntron Variant
ABCG1 transcript variant 3NM_207174.1:c.N/AIntron Variant
ABCG1 transcript variant 5NM_207627.1:c.N/AIntron Variant
ABCG1 transcript variant 6NM_207628.1:c.N/AIntron Variant
ABCG1 transcript variant 7NM_207629.1:c.N/AIntron Variant
ABCG1 transcript variant X1XM_011529806.1:c.N/AIntron Variant
ABCG1 transcript variant X2XM_011529807.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.856A=0.144
1000GenomesAmericanSub694G=0.860A=0.140
1000GenomesEast AsianSub1008G=0.766A=0.234
1000GenomesEuropeSub1006G=0.789A=0.211
1000GenomesGlobalStudy-wide5008G=0.821A=0.179
1000GenomesSouth AsianSub978G=0.830A=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.825A=0.175
The Genome Aggregation DatabaseAfricanSub8720G=0.836A=0.164
The Genome Aggregation DatabaseAmericanSub838G=0.870A=0.130
The Genome Aggregation DatabaseEast AsianSub1616G=0.751A=0.249
The Genome Aggregation DatabaseEuropeSub18478G=0.810A=0.189
The Genome Aggregation DatabaseGlobalStudy-wide29954G=0.816A=0.183
The Genome Aggregation DatabaseOtherSub302G=0.820A=0.180
Trans-Omics for Precision MedicineGlobalStudy-wide29116G=0.815A=0.184
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.817A=0.183
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs37880070.000119alcohol dependence20201924

eQTL of rs3788007 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3788007 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr214365724043657335E067-49441
chr214365736243657511E067-49265
chr214365758243657652E067-49124
chr214365766843658134E067-48642
chr214365828643659025E067-47751
chr214366450843664558E067-42218
chr214366466343664741E067-42035
chr214366480043664952E067-41824
chr214366498343665149E067-41627
chr214366537343665423E067-41353
chr214366544243665492E067-41284
chr214366554643665835E067-40941
chr214366589043666315E067-40461
chr214367020043670251E067-36525
chr214367059443670826E067-35950
chr214367090243670988E067-35788
chr214367121643671412E067-35364
chr214367154643671586E067-35190
chr214367189743672071E067-34705
chr214367230043672401E067-34375
chr214367242943672568E067-34208
chr214367309243673216E067-33560
chr214367322843673300E067-33476
chr214367409843674167E067-32609
chr214367426543674508E067-32268
chr214367454343674651E067-32125
chr214367465743674784E067-31992
chr214367485443675379E067-31397
chr214367540843675534E067-31242
chr214367559443675668E067-31108
chr214367570143675755E067-31021
chr214367583643675953E067-30823
chr214367608043676194E067-30582
chr214367647043676635E067-30141
chr214367666843676718E067-30058
chr214367676843676829E067-29947
chr214367685543676948E067-29828
chr214367697343677016E067-29760
chr214367704443677288E067-29488
chr214367730443678003E067-28773
chr214367846843679488E067-27288
chr214367956443679739E067-27037
chr214367982243679898E067-26878
chr214367998543680029E067-26747
chr214368004243680490E067-26286
chr214368063043680690E067-26086
chr214368070743680796E067-25980
chr214368086543680925E067-25851
chr214368124643682127E067-24649
chr214368216643682408E067-24368
chr214368269143684236E067-22540
chr214368463943684714E067-22062
chr214368491343684975E067-21801
chr214368503243685095E067-21681
chr214368516543685305E067-21471
chr214368531743685478E067-21298
chr214368552043685736E067-21040
chr214368580343685853E067-20923
chr214368794543687999E067-18777
chr214369697643697139E067-9637
chr214369717143697221E067-9555
chr214369731143697355E067-9421
chr214369769243697742E067-9034
chr214371989943720116E06713123
chr214372020943720264E06713433
chr214372030643720360E06713530
chr214372040543720643E06713629
chr214365724043657335E068-49441
chr214365736243657511E068-49265
chr214365758243657652E068-49124
chr214365766843658134E068-48642
chr214365828643659025E068-47751
chr214365987743659959E068-46817
chr214366020543660487E068-46289
chr214366087943660963E068-45813
chr214366498343665149E068-41627
chr214366537343665423E068-41353
chr214366544243665492E068-41284
chr214366554643665835E068-40941
chr214366589043666315E068-40461
chr214366918543669325E068-37451
chr214366943143669584E068-37192
chr214367020043670251E068-36525
chr214367059443670826E068-35950
chr214367090243670988E068-35788
chr214367121643671412E068-35364
chr214367154643671586E068-35190
chr214367189743672071E068-34705
chr214367230043672401E068-34375
chr214367242943672568E068-34208
chr214367309243673216E068-33560
chr214367322843673300E068-33476
chr214367409843674167E068-32609
chr214367485443675379E068-31397
chr214367570143675755E068-31021
chr214367583643675953E068-30823
chr214367608043676194E068-30582
chr214367647043676635E068-30141
chr214367666843676718E068-30058
chr214367676843676829E068-29947
chr214367685543676948E068-29828
chr214367697343677016E068-29760
chr214367704443677288E068-29488
chr214367730443678003E068-28773
chr214367846843679488E068-27288
chr214367956443679739E068-27037
chr214367982243679898E068-26878
chr214367998543680029E068-26747
chr214368124643682127E068-24649
chr214368216643682408E068-24368
chr214368269143684236E068-22540
chr214368430743684380E068-22396
chr214368463943684714E068-22062
chr214368491343684975E068-21801
chr214368503243685095E068-21681
chr214368516543685305E068-21471
chr214368531743685478E068-21298
chr214368552043685736E068-21040
chr214368717943687589E068-19187
chr214368764343687703E068-19073
chr214368774943687901E068-18875
chr214368794543687999E068-18777
chr214368811143688649E068-18127
chr214368874043688794E068-17982
chr214368885443688940E068-17836
chr214368898143689031E068-17745
chr214368917743689248E068-17528
chr214368939643689937E068-16839
chr214369686843696919E068-9857
chr214369697643697139E068-9637
chr214369717143697221E068-9555
chr214369731143697355E068-9421
chr214369769243697742E068-9034
chr214369784743697997E068-8779
chr214371959543719709E06812819
chr214371972543719776E06812949
chr214371989943720116E06813123
chr214372020943720264E06813433
chr214372030643720360E06813530
chr214372040543720643E06813629
chr214372186843722282E06815092
chr214372240843722677E06815632
chr214372283843723051E06816062
chr214372338443723441E06816608
chr214372346443723514E06816688
chr214372379143723844E06817015
chr214372463043724739E06817854
chr214372501843725136E06818242
chr214372526743725418E06818491
chr214365724043657335E069-49441
chr214365736243657511E069-49265
chr214365758243657652E069-49124
chr214365766843658134E069-48642
chr214365828643659025E069-47751
chr214366480043664952E069-41824
chr214366498343665149E069-41627
chr214366537343665423E069-41353
chr214366544243665492E069-41284
chr214366554643665835E069-40941
chr214366589043666315E069-40461
chr214367020043670251E069-36525
chr214367059443670826E069-35950
chr214367090243670988E069-35788
chr214367121643671412E069-35364
chr214367154643671586E069-35190
chr214367189743672071E069-34705
chr214367230043672401E069-34375
chr214367242943672568E069-34208
chr214367309243673216E069-33560
chr214367322843673300E069-33476
chr214367409843674167E069-32609
chr214367426543674508E069-32268
chr214367454343674651E069-32125
chr214367465743674784E069-31992
chr214367485443675379E069-31397
chr214367540843675534E069-31242
chr214367559443675668E069-31108
chr214367570143675755E069-31021
chr214367583643675953E069-30823
chr214367608043676194E069-30582
chr214367647043676635E069-30141
chr214367666843676718E069-30058
chr214367676843676829E069-29947
chr214367685543676948E069-29828
chr214367697343677016E069-29760
chr214367704443677288E069-29488
chr214367730443678003E069-28773
chr214367846843679488E069-27288
chr214367982243679898E069-26878
chr214367998543680029E069-26747
chr214368004243680490E069-26286
chr214368063043680690E069-26086
chr214368070743680796E069-25980
chr214368086543680925E069-25851
chr214368124643682127E069-24649
chr214368216643682408E069-24368
chr214368269143684236E069-22540
chr214368430743684380E069-22396
chr214368463943684714E069-22062
chr214368491343684975E069-21801
chr214368503243685095E069-21681
chr214368516543685305E069-21471
chr214368531743685478E069-21298
chr214368552043685736E069-21040
chr214368580343685853E069-20923
chr214368652343686675E069-20101
chr214368669443686744E069-20032
chr214368677243686905E069-19871
chr214368690843687003E069-19773
chr214368717943687589E069-19187
chr214368764343687703E069-19073
chr214368774943687901E069-18875
chr214368794543687999E069-18777
chr214368811143688649E069-18127
chr214368874043688794E069-17982
chr214368885443688940E069-17836
chr214368898143689031E069-17745
chr214368917743689248E069-17528
chr214368939643689937E069-16839
chr214369717143697221E069-9555
chr214369731143697355E069-9421
chr214369769243697742E069-9034
chr214369784743697997E069-8779
chr214371553543715651E0698759
chr214371573743716158E0698961
chr214372240843722677E06915632
chr214372283843723051E06916062
chr214365724043657335E070-49441
chr214365736243657511E070-49265
chr214365758243657652E070-49124
chr214365766843658134E070-48642
chr214365828643659025E070-47751
chr214366537343665423E070-41353
chr214366544243665492E070-41284
chr214366554643665835E070-40941
chr214366589043666315E070-40461
chr214367059443670826E070-35950
chr214367090243670988E070-35788
chr214367121643671412E070-35364
chr214367154643671586E070-35190
chr214367309243673216E070-33560
chr214367322843673300E070-33476
chr214367409843674167E070-32609
chr214367426543674508E070-32268
chr214367454343674651E070-32125
chr214367465743674784E070-31992
chr214367485443675379E070-31397
chr214367540843675534E070-31242
chr214367559443675668E070-31108
chr214367570143675755E070-31021
chr214367583643675953E070-30823
chr214367608043676194E070-30582
chr214367647043676635E070-30141
chr214367666843676718E070-30058
chr214367676843676829E070-29947
chr214367685543676948E070-29828
chr214367697343677016E070-29760
chr214367704443677288E070-29488
chr214367846843679488E070-27288
chr214368124643682127E070-24649
chr214368216643682408E070-24368
chr214369769243697742E070-9034
chr214369784743697997E070-8779
chr214372240843722677E07015632
chr214373340543733503E07026629
chr214373352943733579E07026753
chr214373363143734428E07026855
chr214373534343736065E07028567
chr214365724043657335E071-49441
chr214365736243657511E071-49265
chr214365758243657652E071-49124
chr214365766843658134E071-48642
chr214365828643659025E071-47751
chr214365928043659330E071-47446
chr214365943243659571E071-47205
chr214365987743659959E071-46817
chr214366020543660487E071-46289
chr214366265943663110E071-43666
chr214366318543663225E071-43551
chr214366450843664558E071-42218
chr214366466343664741E071-42035
chr214366480043664952E071-41824
chr214366498343665149E071-41627
chr214366537343665423E071-41353
chr214366544243665492E071-41284
chr214366554643665835E071-40941
chr214366589043666315E071-40461
chr214366855643668647E071-38129
chr214366871043668760E071-38016
chr214366907143669145E071-37631
chr214366918543669325E071-37451
chr214366943143669584E071-37192
chr214367020043670251E071-36525
chr214367059443670826E071-35950
chr214367090243670988E071-35788
chr214367121643671412E071-35364
chr214367154643671586E071-35190
chr214367189743672071E071-34705
chr214367230043672401E071-34375
chr214367242943672568E071-34208
chr214367309243673216E071-33560
chr214367322843673300E071-33476
chr214367409843674167E071-32609
chr214367426543674508E071-32268
chr214367454343674651E071-32125
chr214367465743674784E071-31992
chr214367485443675379E071-31397
chr214367540843675534E071-31242
chr214367583643675953E071-30823
chr214367608043676194E071-30582
chr214367647043676635E071-30141
chr214367666843676718E071-30058
chr214367676843676829E071-29947
chr214367685543676948E071-29828
chr214367697343677016E071-29760
chr214367704443677288E071-29488
chr214367730443678003E071-28773
chr214367846843679488E071-27288
chr214367956443679739E071-27037
chr214367982243679898E071-26878
chr214367998543680029E071-26747
chr214368004243680490E071-26286
chr214368063043680690E071-26086
chr214368070743680796E071-25980
chr214368086543680925E071-25851
chr214368124643682127E071-24649
chr214368216643682408E071-24368
chr214368269143684236E071-22540
chr214368430743684380E071-22396
chr214368463943684714E071-22062
chr214368491343684975E071-21801
chr214368503243685095E071-21681
chr214368516543685305E071-21471
chr214368531743685478E071-21298
chr214368552043685736E071-21040
chr214368580343685853E071-20923
chr214368652343686675E071-20101
chr214368669443686744E071-20032
chr214368677243686905E071-19871
chr214368690843687003E071-19773
chr214368717943687589E071-19187
chr214368764343687703E071-19073
chr214368774943687901E071-18875
chr214368794543687999E071-18777
chr214368811143688649E071-18127
chr214368874043688794E071-17982
chr214368885443688940E071-17836
chr214368898143689031E071-17745
chr214368917743689248E071-17528
chr214368939643689937E071-16839
chr214369697643697139E071-9637
chr214369717143697221E071-9555
chr214369731143697355E071-9421
chr214369769243697742E071-9034
chr214369784743697997E071-8779
chr214372240843722677E07115632
chr214372501843725136E07118242
chr214372526743725418E07118491
chr214365724043657335E072-49441
chr214365736243657511E072-49265
chr214365758243657652E072-49124
chr214365766843658134E072-48642
chr214365828643659025E072-47751
chr214365928043659330E072-47446
chr214365943243659571E072-47205
chr214365987743659959E072-46817
chr214366020543660487E072-46289
chr214366087943660963E072-45813
chr214366118543661278E072-45498
chr214366480043664952E072-41824
chr214366498343665149E072-41627
chr214366537343665423E072-41353
chr214366544243665492E072-41284
chr214366554643665835E072-40941
chr214366589043666315E072-40461
chr214367020043670251E072-36525
chr214367059443670826E072-35950
chr214367090243670988E072-35788
chr214367121643671412E072-35364
chr214367154643671586E072-35190
chr214367189743672071E072-34705
chr214367230043672401E072-34375
chr214367242943672568E072-34208
chr214367309243673216E072-33560
chr214367322843673300E072-33476
chr214367409843674167E072-32609
chr214367426543674508E072-32268
chr214367454343674651E072-32125
chr214367485443675379E072-31397
chr214367570143675755E072-31021
chr214367583643675953E072-30823
chr214367608043676194E072-30582
chr214367647043676635E072-30141
chr214367666843676718E072-30058
chr214367676843676829E072-29947
chr214367685543676948E072-29828
chr214367697343677016E072-29760
chr214367704443677288E072-29488
chr214367730443678003E072-28773
chr214367846843679488E072-27288
chr214367956443679739E072-27037
chr214367982243679898E072-26878
chr214367998543680029E072-26747
chr214368004243680490E072-26286
chr214368124643682127E072-24649
chr214368216643682408E072-24368
chr214368269143684236E072-22540
chr214368430743684380E072-22396
chr214368463943684714E072-22062
chr214368491343684975E072-21801
chr214368503243685095E072-21681
chr214368516543685305E072-21471
chr214368531743685478E072-21298
chr214368552043685736E072-21040
chr214368580343685853E072-20923
chr214368652343686675E072-20101
chr214368669443686744E072-20032
chr214368677243686905E072-19871
chr214368690843687003E072-19773
chr214368717943687589E072-19187
chr214368764343687703E072-19073
chr214368774943687901E072-18875
chr214368794543687999E072-18777
chr214368811143688649E072-18127
chr214368874043688794E072-17982
chr214368885443688940E072-17836
chr214368898143689031E072-17745
chr214368917743689248E072-17528
chr214369686843696919E072-9857
chr214369697643697139E072-9637
chr214369717143697221E072-9555
chr214369731143697355E072-9421
chr214369769243697742E072-9034
chr214371989943720116E07213123
chr214372020943720264E07213433
chr214372030643720360E07213530
chr214372040543720643E07213629
chr214372240843722677E07215632
chr214372283843723051E07216062
chr214372938543730761E07222609
chr214365724043657335E073-49441
chr214365736243657511E073-49265
chr214365758243657652E073-49124
chr214365987743659959E073-46817
chr214366537343665423E073-41353
chr214366544243665492E073-41284
chr214366554643665835E073-40941
chr214366589043666315E073-40461
chr214367020043670251E073-36525
chr214367059443670826E073-35950
chr214367090243670988E073-35788
chr214367121643671412E073-35364
chr214367154643671586E073-35190
chr214367189743672071E073-34705
chr214367230043672401E073-34375
chr214367242943672568E073-34208
chr214367309243673216E073-33560
chr214367322843673300E073-33476
chr214367409843674167E073-32609
chr214367426543674508E073-32268
chr214367454343674651E073-32125
chr214367465743674784E073-31992
chr214367485443675379E073-31397
chr214367540843675534E073-31242
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