rs3795324

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0301 (8986/29856,GnomAD)
C=0309 (9007/29118,TOPMED)
C=0324 (1622/5008,1000G)
C=0189 (728/3854,ALSPAC)
C=0195 (724/3708,TWINSUK)
chr1:160673321 (GRCh38.p7) (1q23.3)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.160673321A>C
GRCh37.p13 chr 1NC_000001.10:g.160643111A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.506C=0.494
1000GenomesAmericanSub694A=0.820C=0.180
1000GenomesEast AsianSub1008A=0.517C=0.483
1000GenomesEuropeSub1006A=0.817C=0.183
1000GenomesGlobalStudy-wide5008A=0.676C=0.324
1000GenomesSouth AsianSub978A=0.820C=0.180
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.811C=0.189
The Genome Aggregation DatabaseAfricanSub8676A=0.548C=0.452
The Genome Aggregation DatabaseAmericanSub834A=0.820C=0.180
The Genome Aggregation DatabaseEast AsianSub1612A=0.490C=0.510
The Genome Aggregation DatabaseEuropeSub18432A=0.780C=0.219
The Genome Aggregation DatabaseGlobalStudy-wide29856A=0.699C=0.301
The Genome Aggregation DatabaseOtherSub302A=0.840C=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.690C=0.309
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.805C=0.195
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs37953240.000908alcohol dependence20201924

eQTL of rs3795324 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3795324 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1160595076160595652E071-47459
chr1160692559160692827E07149448
chr1160692559160692827E07449448